Stem-loop aof-MIR408

Accession

MI0040602

Description

Asparagus officinalis aof-MIR408 precursor miRNA

Sequence

auaacaaauacaggaaggcgaaggcgaagccggcauugaagauauuggcauugagaguuguuguugcccuuuucaUGCACUGCCUCUUCCCUGGCUuccaucacccuuucgccuccucuucuuucucuccccuccaaaaugcuagcugugc
...........((((.((((((((.((((((((....(((((....(((((.(((((..((....)).))))).)))).)....))))).)))))))).......))))))))))))..................................

Structure

-----------------------auaacaaauac    a        ------c        cauu     uauu -    u     uu  u 
                                  agga ggcgaagg       gaagccgg    gaaga    g gcau gagag  gu g
                                  |||| ||||||||       ||||||||    |||||    | |||| |||||  ||  
                                  uccu ccgcuuuc       cuUCGGUC    CUUCU    C CGUa uuuuc  cg u
cgugucgaucguaaaaccuccccucucuuucuuc    -        ccacuac        ---C     CCGU A    c     -c  u 

Annotation confidence Not enough data

Genome context

chr7: 36120961-36121111 [-]

Mature aof-miR408

• Accession: MIMAT0049808
• Description: Asparagus officinalis aof-miR408 mature miRNA
• Sequence: 76 - UGCACUGCCUCUUCCCUGGCU - 96
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 29093472
   The asparagus genome sheds light on the origin and evolution of a young Y chromosome
   Harkess A, Zhou J, Xu C, Bowers JE, Van der Hulst R, Ayyampalayam S, Mercati F, Riccardi P, McKain MR, Kakrana A, Tang H, Ray J, Groenendijk J, Arikit S, Mathioni SM, Nakano M, Shan H, Telgmann-Rauber A, Kanno A, Yue Z, Chen H, Li W, Chen Y, Xu X, Zhang Y
   Nat Commun (2017) 8:1279