Stem-loop aof-MIR399b

Accession

MI0040601

Description

Asparagus officinalis aof-MIR399b precursor miRNA

Literature search

1 open access papers mention aof-MIR399b
(1 sentences)

Sequence

3559 reads, 787.0 reads per million, 9 experiments

aaagauguggggauugagaauuacaGUGCAACUCUCCUUUGGCACCgaagccaauauuggcgcauuucugcccuuuuccuacuggUGCCAAAGGAGAUUUGCCCUGccauucaccaacacaguuguucggu
.................((((..(((.((((.(((((((((((((((..((((....))))(((....)))...........))))))))))))))).)))).)))..))))(((((((....)))).)))

Structure

--aaagauguggggauuga    ua   U    C               aagccaauauuggcgc 
                   gaau  caG GCAA UCUCCUUUGGCACCg                a
                   ||||  ||| |||| |||||||||||||||                u
                   cuua  GUC CGUU AGAGGAAACCGUggu                u
uggcuuguugacacaacca    cc   C    U               cauccuuuucccgucu 

Annotation confidence High

Genome context

chr6: 43289967-43290097 [-]

Mature aof-miR399b-5p

• Accession: MIMAT0049807
• Description: Asparagus officinalis aof-miR399b-5p mature miRNA
• Sequence: 26 - GUGCAACUCUCCUUUGGCACC - 46
• Evidence: experimental ; Illumina [1]

Mature aof-miR399b-3p

• Accession: MIMAT0060746
• Description: Asparagus officinalis aof-miR399b-3p mature miRNA
• Sequence: 86 - UGCCAAAGGAGAUUUGCCCUG - 106
• Evidence: experimental ; unknown

References

1. PubMed ID: 29093472
   The asparagus genome sheds light on the origin and evolution of a young Y chromosome
   Harkess A, Zhou J, Xu C, Bowers JE, Van der Hulst R, Ayyampalayam S, Mercati F, Riccardi P, McKain MR, Kakrana A, Tang H, Ray J, Groenendijk J, Arikit S, Mathioni SM, Nakano M, Shan H, Telgmann-Rauber A, Kanno A, Yue Z, Chen H, Li W, Chen Y, Xu X, Zhang Y
   Nat Commun (2017) 8:1279