Stem-loop aof-MIR399a

Accession

MI0040600

Description

Asparagus officinalis aof-MIR399a precursor miRNA

Literature search

1 open access papers mention aof-MIR399a
(1 sentences)

Sequence

3323 reads, 840.0 reads per million, 10 experiments

caagucagucucgGGGUUUCUCUCCUUUGGCAGAggcaacauguugugagagaagaaguccaugcaugcuguuauuucUGCCAAAGGAGAGUUGCCCUGugacugccuu
.(((.(((((.((((((..(((((((((((((((((((.(((((.(((.((.......)))))))))).)))...))))))))))))))))..)))))).))))).)))

Structure

c   u     u      UU                ---   a     u   a  ga 
 aag caguc cgGGGU  CUCUCCUUUGGCAGAg   gca caugu gug ga  a
 ||| ||||| ||||||  ||||||||||||||||   ||| ||||| ||| ||  g
 uuc gucag GUCCCG  GAGAGGAAACCGUcuu   ugu guacg uac cu  a
-   c     u      UU                uau   c     -   -  ga 

Annotation confidence High

Genome context

chr4: 71274936-71275044 [+]

Mature aof-miR399a-5p

• Accession: MIMAT0060745
• Description: Asparagus officinalis aof-miR399a-5p mature miRNA
• Sequence: 14 - GGGUUUCUCUCCUUUGGCAGA - 34
• Evidence: experimental ; unknown

Mature aof-miR399a-3p

• Accession: MIMAT0049806
• Description: Asparagus officinalis aof-miR399a-3p mature miRNA
• Sequence: 79 - UGCCAAAGGAGAGUUGCCCUG - 99
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 29093472
   The asparagus genome sheds light on the origin and evolution of a young Y chromosome
   Harkess A, Zhou J, Xu C, Bowers JE, Van der Hulst R, Ayyampalayam S, Mercati F, Riccardi P, McKain MR, Kakrana A, Tang H, Ray J, Groenendijk J, Arikit S, Mathioni SM, Nakano M, Shan H, Telgmann-Rauber A, Kanno A, Yue Z, Chen H, Li W, Chen Y, Xu X, Zhang Y
   Nat Commun (2017) 8:1279