Stem-loop aof-MIR396b

Accession

MI0040598

Description

Asparagus officinalis aof-MIR396b precursor miRNA

Literature search

1 open access papers mention aof-MIR396b
(5 sentences)

Sequence

63450 reads, 23576.0 reads per million, 10 experiments

uucauaaaugguucucuuuguauuuUUCCACAGCUUUCUUGAACUGcauagaaaagggcuucaauugccgaaggcugccaauuuugcgGUUCAAUAAAGCUGUGGGAAAuuacagagggagacuaaauugaccg
.(((....((((((((((((((.((((((((((((((.((((((((((.......((.((((.......)))).))........)))))))))).)))))))))))))).)))))))))).))))...)))...

Structure

--u   uaaa    -          u              C          -uagaaaa  g    aa 
   uca    uggu ucucuuugua uuUUCCACAGCUUU UUGAACUGca        gg cuuc  u
   |||    |||| |||||||||| |||||||||||||| ||||||||||        || ||||  u
   agu    auca agggagacau AAAGGGUGUCGAAA AACUUGgcgu        uc gaag  g
gcc   -uaa    g          u              U          uuuaaccg  g    cc 

Annotation confidence High

Genome context

chr5: 125132617-125132750 [+]

Mature aof-miR396b-5p

• Accession: MIMAT0049804
• Description: Asparagus officinalis aof-miR396b-5p mature miRNA
• Sequence: 26 - UUCCACAGCUUUCUUGAACUG - 46
• Evidence: experimental ; Illumina [1]

Mature aof-miR396b-3p

• Accession: MIMAT0060743
• Description: Asparagus officinalis aof-miR396b-3p mature miRNA
• Sequence: 89 - GUUCAAUAAAGCUGUGGGAAA - 109
• Evidence: experimental ; unknown

References

1. PubMed ID: 29093472
   The asparagus genome sheds light on the origin and evolution of a young Y chromosome
   Harkess A, Zhou J, Xu C, Bowers JE, Van der Hulst R, Ayyampalayam S, Mercati F, Riccardi P, McKain MR, Kakrana A, Tang H, Ray J, Groenendijk J, Arikit S, Mathioni SM, Nakano M, Shan H, Telgmann-Rauber A, Kanno A, Yue Z, Chen H, Li W, Chen Y, Xu X, Zhang Y
   Nat Commun (2017) 8:1279