Stem-loop aof-MIR393b

Accession

MI0040593

Description

Asparagus officinalis aof-MIR393b precursor miRNA

Literature search

1 open access papers mention aof-MIR393b
(4 sentences)

Sequence

3131 reads, 1266.0 reads per million, 10 experiments

cucuuccaaguagcuaauggagaauUCCAAAGGGAUCGCAUUGAUCUaauguaucuccaacacuuguguguuugcuuuuuuacuuagcaagaUCAUGCGUUCCCUUCGGAGAUUuccauuuguugcuucuucuuccu
.......(((((((.((((((((.((((.((((((.(((((.(((((...........(((((....)))))((((.........)))))))))))))).)))))).)))).)))))))).))))))).........

Structure

--cucuucc       u        a    A      U     U     ------aauguaucucc     u 
         aaguagc aauggaga uUCC AAGGGA CGCAU GAUCU                 aacac u
         ||||||| |||||||| |||| |||||| ||||| |||||                 |||||  
         uucguug uuaccuUU GAGG UUCCCU GCGUA CUaga                 uugug g
uccuucuuc       u        A    C      U     -     acgauucauuuuuucgu     u 

Annotation confidence Medium

Genome context

chr1: 16904620-16904756 [+]

Mature aof-miR393b-5p

• Accession: MIMAT0049799
• Description: Asparagus officinalis aof-miR393b-5p mature miRNA
• Sequence: 26 - UCCAAAGGGAUCGCAUUGAUCU - 47
• Evidence: experimental ; Illumina [1]

Mature aof-miR393b-3p

• Accession: MIMAT0060741
• Description: Asparagus officinalis aof-miR393b-3p mature miRNA
• Sequence: 93 - UCAUGCGUUCCCUUCGGAGAUU - 114
• Evidence: experimental ; unknown

References

1. PubMed ID: 29093472
   The asparagus genome sheds light on the origin and evolution of a young Y chromosome
   Harkess A, Zhou J, Xu C, Bowers JE, Van der Hulst R, Ayyampalayam S, Mercati F, Riccardi P, McKain MR, Kakrana A, Tang H, Ray J, Groenendijk J, Arikit S, Mathioni SM, Nakano M, Shan H, Telgmann-Rauber A, Kanno A, Yue Z, Chen H, Li W, Chen Y, Xu X, Zhang Y
   Nat Commun (2017) 8:1279