Stem-loop aof-MIR393b

Accession

MI0040593

Description

Asparagus officinalis aof-MIR393b precursor miRNA

Literature search

1 open access papers mention aof-MIR393b
(4 sentences)

Sequence

cucuuccaaguagcuaauggagaauUCCAAAGGGAUCGCAUUGAUCUaauguaucuccaacacuuguguguuugcuuuuuuacuuagcaagaucaugcguucccuucggagauuuccauuuguugcuucuucuuccu
.......(((((((.((((((((.((((.((((((.(((((.(((((...........(((((....)))))((((.........)))))))))))))).)))))).)))).)))))))).))))))).........

Structure

--cucuucc       u        a    A      U     U     ------aauguaucucc     u 
         aaguagc aauggaga uUCC AAGGGA CGCAU GAUCU                 aacac u
         ||||||| |||||||| |||| |||||| ||||| |||||                 |||||  
         uucguug uuaccuuu gagg uucccu gcgua cuaga                 uugug g
uccuucuuc       u        a    c      u     -     acgauucauuuuuucgu     u 

Annotation confidence Not enough data

Genome context

chr1: 16904620-16904756 [+]

Mature aof-miR393b

• Accession: MIMAT0049799
• Description: Asparagus officinalis aof-miR393b mature miRNA
• Sequence: 26 - UCCAAAGGGAUCGCAUUGAUCU - 47
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 29093472
   The asparagus genome sheds light on the origin and evolution of a young Y chromosome
   Harkess A, Zhou J, Xu C, Bowers JE, Van der Hulst R, Ayyampalayam S, Mercati F, Riccardi P, McKain MR, Kakrana A, Tang H, Ray J, Groenendijk J, Arikit S, Mathioni SM, Nakano M, Shan H, Telgmann-Rauber A, Kanno A, Yue Z, Chen H, Li W, Chen Y, Xu X, Zhang Y
   Nat Commun (2017) 8:1279