Stem-loop aof-MIR319b

Accession

MI0040590

Description

Asparagus officinalis aof-MIR319b precursor miRNA

Literature search

2 open access papers mention aof-MIR319b
(2 sentences)

Sequence

91384 reads, 53841.0 reads per million, 10 experiments

gcggcagaaaugggggcuccuuucagcccagaaacaauaaugacaaaauauuuugauuauuuucguugUUUGGACUGAAGGGAGCUCCUaauucuucug
.(((.((((.((((((((((((((((.((((((((...(((((((((....)))).)))))...))).))))).)))))))))))))))).)))).)))

Structure

g   c    a                c     -   aau     -    a 
 cgg agaa ugggggcuccuuucag ccaga aac   aauga caaa u
 ||| |||| |||||||||||||||| ||||| |||   ||||| ||||  
 guc ucuu aUCCUCGAGGGAAGUC GGUUU uug   uuauu guuu a
-   u    a                A     g   cuu     a    u 

Annotation confidence Not enough data

Genome context

chr9: 6435045-6435143 [-]

Mature aof-miR319b-3p

• Accession: MIMAT0049796
• Description: Asparagus officinalis aof-miR319b-3p mature miRNA
• Sequence: 69 - UUUGGACUGAAGGGAGCUCCU - 89
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 29093472
   The asparagus genome sheds light on the origin and evolution of a young Y chromosome
   Harkess A, Zhou J, Xu C, Bowers JE, Van der Hulst R, Ayyampalayam S, Mercati F, Riccardi P, McKain MR, Kakrana A, Tang H, Ray J, Groenendijk J, Arikit S, Mathioni SM, Nakano M, Shan H, Telgmann-Rauber A, Kanno A, Yue Z, Chen H, Li W, Chen Y, Xu X, Zhang Y
   Nat Commun (2017) 8:1279