Stem-loop aof-MIR2275b

Accession

MI0040587

Description

Asparagus officinalis aof-MIR2275b precursor miRNA

Literature search

1 open access papers mention aof-MIR2275b
(1 sentences)

Sequence

uuaacucuuggagcaugcaauuuugUCUGGUUUCCUCCAAUAUCUCAccuucaacugcucaacuauuugcauaaucaagaauauaaauuguguguggugguauugaaugugagaauugguggaaacugaacuuguaugucugcuaauauugguauua
.......(((((((((((((....((.((((((((.(((((.((((((.(((((.((((..(((((..(((((((...........))))))))))))))))))))).))))))))))).)))))))).))))))))).)).))))...........

Structure

----uuaacuc    -  -       uuuu  C        U     A      c     c    ca     uu       caag 
           uugg ag caugcaa    gU UGGUUUCC CCAAU UCUCAc uucaa ugcu  acuau  gcauaau    a
           |||| || |||||||    || |||||||| ||||| |||||| ||||| ||||  |||||  |||||||    a
           aauc uc guauguu    ca gucaaagg gguua agagug aaguu augg  uggug  uguguua    u
auuaugguuau    g  u       ----  a        u     -      u     -    --     --       aaua 

Annotation confidence Not enough data

Genome context

chr4: 142461369-142461525 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from aof-MIR2275b

Mature aof-miR2275b

• Accession: MIMAT0049793
• Description: Asparagus officinalis aof-miR2275b mature miRNA
• Sequence: 26 - UCUGGUUUCCUCCAAUAUCUCA - 47
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 29093472
   The asparagus genome sheds light on the origin and evolution of a young Y chromosome
   Harkess A, Zhou J, Xu C, Bowers JE, Van der Hulst R, Ayyampalayam S, Mercati F, Riccardi P, McKain MR, Kakrana A, Tang H, Ray J, Groenendijk J, Arikit S, Mathioni SM, Nakano M, Shan H, Telgmann-Rauber A, Kanno A, Yue Z, Chen H, Li W, Chen Y, Xu X, Zhang Y
   Nat Commun (2017) 8:1279