Stem-loop aof-MIR2118a

Accession

MI0040585

Description

Asparagus officinalis aof-MIR2118a precursor miRNA

Literature search

1 open access papers mention aof-MIR2118a
(1 sentences)

Sequence

281 reads, 166.0 reads per million, 8 experiments

gaagaacgcgcuucuaagagcgagaGGAUUGGGGUUGUCGAGGAAACaaccgaguccuaacucugccaauauuggucgagaugggaaacuuguuauCUCCCGAUGCCACCUAAUCCUUugguucuuaagggcuucuuccucuu
((((((.((.((..(((((((.((((((((((((.(((((.((((((((.....(((((.(((.((((....)))).))).)))))...)))))...)))))))).).))))))))))).))))))))).)))))))).....

Structure

-----      c  g  uc       g           - U     A   ---     ccgag     a   u    a 
     gaagaa gc cu  uaagagc agaGGAUUGGG G UGUCG GGA   AACaa     uccua cuc gcca u
     |||||| || ||  ||||||| ||||||||||| | ||||| |||   |||||     ||||| ||| ||||  
     cuucuu cg ga  auucuug uUUCCUAAUCC C GUAGC CCU   uuguu     agggu gag uggu a
uucuc      -  g  --       g           A C     -   Cua     --caa     a   c    u 

Annotation confidence High

Genome context

chr1: 113059877-113060019 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from aof-MIR2118a

Mature aof-miR2118a-5p

• Accession: MIMAT0060740
• Description: Asparagus officinalis aof-miR2118a-5p mature miRNA
• Sequence: 26 - GGAUUGGGGUUGUCGAGGAAAC - 47
• Evidence: experimental ; unknown

Mature aof-miR2118a-3p

• Accession: MIMAT0049791
• Description: Asparagus officinalis aof-miR2118a-3p mature miRNA
• Sequence: 97 - CUCCCGAUGCCACCUAAUCCUU - 118
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 29093472
   The asparagus genome sheds light on the origin and evolution of a young Y chromosome
   Harkess A, Zhou J, Xu C, Bowers JE, Van der Hulst R, Ayyampalayam S, Mercati F, Riccardi P, McKain MR, Kakrana A, Tang H, Ray J, Groenendijk J, Arikit S, Mathioni SM, Nakano M, Shan H, Telgmann-Rauber A, Kanno A, Yue Z, Chen H, Li W, Chen Y, Xu X, Zhang Y
   Nat Commun (2017) 8:1279