Stem-loop aof-MIR2118b

Accession

MI0040583

Description

Asparagus officinalis aof-MIR2118b precursor miRNA

Sequence

auaagagcuauggaaauggaaggauggggaaguucuguuuccaauuuucuuuuaucaaguccauaacuugaugagaaauggguuacagaguacUUCCCGAAGCCUCCCAUUUCUAugguucuugc
.((((((((((((((((((.(((...((((((((((((..((...((((((..(((((((.....)))))))))))))..))..)))))..)))))))....))).)))))))))))))))))).

Structure

a                  a   -aug       --     uu  aau      uu       c 
 uaagagcuauggaaaugg agg    gggaagu  ucugu  cc   uuucuu  aucaagu c
 |||||||||||||||||| |||    |||||||  |||||  ||   ||||||  ||||||| a
 guucuugguAUCUUUACC UCC    CCCUUca  agaca  gg   aaagag  uaguuca u
c                  C   GAAG       ug     uu  -gu      --       a 

Annotation confidence Not enough data

Genome context

chr1: 113067181-113067305 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from aof-MIR2118b

Mature aof-miR2118b

• Accession: MIMAT0049789
• Description: Asparagus officinalis aof-miR2118b mature miRNA
• Sequence: 94 - UUCCCGAAGCCUCCCAUUUCUA - 115
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 29093472
   The asparagus genome sheds light on the origin and evolution of a young Y chromosome
   Harkess A, Zhou J, Xu C, Bowers JE, Van der Hulst R, Ayyampalayam S, Mercati F, Riccardi P, McKain MR, Kakrana A, Tang H, Ray J, Groenendijk J, Arikit S, Mathioni SM, Nakano M, Shan H, Telgmann-Rauber A, Kanno A, Yue Z, Chen H, Li W, Chen Y, Xu X, Zhang Y
   Nat Commun (2017) 8:1279