Stem-loop aof-MIR171c

Accession

MI0040581

Description

Asparagus officinalis aof-MIR171c precursor miRNA

Literature search

2 open access papers mention aof-MIR171c
(6 sentences)

Sequence

44775 reads, 13901.0 reads per million, 10 experiments

aucgaagaguguuugauagaagaggAGGUAUUGGCGUGUCUCAAUUuaaggacgugguuggauauugucaacagcuauguaauuugaUUGAGCCGCGUCAAUAUCUCCuugugcuucaagcacucaaacgaau
.(((..((((((((((.....(((((((((((((((((.(((((((.((..(((((((((...........)))))))))..)).))))))).))))))))))))))))).....))))))))))...)))..

Structure

-a   -aa          uagaa                 U       u  gg         gaua 
  ucg   gaguguuuga     gaggAGGUAUUGGCGUG CUCAAUU aa  acgugguug    u
  |||   ||||||||||     ||||||||||||||||| ||||||| ||  |||||||||    u
  agc   cucacgaacu     uuCCUCUAUAACUGCGC GAGUUag uu  uguaucgac    g
ua   aaa          ucgug                 C       u  aa         aacu 

Annotation confidence High

Genome context

chr3: 25675520-25675652 [-]

Mature aof-miR171c-5p

• Accession: MIMAT0060738
• Description: Asparagus officinalis aof-miR171c-5p mature miRNA
• Sequence: 26 - AGGUAUUGGCGUGUCUCAAUU - 46
• Evidence: experimental ; unknown

Mature aof-miR171c-3p

• Accession: MIMAT0049787
• Description: Asparagus officinalis aof-miR171c-3p mature miRNA
• Sequence: 88 - UUGAGCCGCGUCAAUAUCUCC - 108
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 29093472
   The asparagus genome sheds light on the origin and evolution of a young Y chromosome
   Harkess A, Zhou J, Xu C, Bowers JE, Van der Hulst R, Ayyampalayam S, Mercati F, Riccardi P, McKain MR, Kakrana A, Tang H, Ray J, Groenendijk J, Arikit S, Mathioni SM, Nakano M, Shan H, Telgmann-Rauber A, Kanno A, Yue Z, Chen H, Li W, Chen Y, Xu X, Zhang Y
   Nat Commun (2017) 8:1279