Stem-loop aof-MIR171b

Accession

MI0040580

Description

Asparagus officinalis aof-MIR171b precursor miRNA

Literature search

2 open access papers mention aof-MIR171b
(6 sentences)

Sequence

9464 reads, 2023.0 reads per million, 10 experiments

cgcgguggaugauuaaaagaagCGAUAUUGGUGAGGUUCAAUCcgaugauugaauuuacacgacgaugguagaacugucucagaUUGAGCCGCGCCAAUAUCACUucccuccauu
...((((((.(.......((((.((((((((((.(((((((((.((.(((....(((((.(......))))))...))))).))))))))).)))))))))).))))).))))))

Structure

cgc      u auuaaaa    C          A         c  u   ugaa     a ga 
   ggugga g       gaag GAUAUUGGUG GGUUCAAUC ga gau    uuuac c  c
   |||||| |       |||| |||||||||| ||||||||| || |||    ||||| |   
   uuaccu c       cuUC CUAUAACCGC CCGAGUUag cu cug    agaug g  g
---      c -------    A          G         a  -   -uca     - ua 

Annotation confidence High

Genome context

chr5: 123303160-123303274 [-]

Mature aof-miR171b-5p

• Accession: MIMAT0060737
• Description: Asparagus officinalis aof-miR171b-5p mature miRNA
• Sequence: 23 - CGAUAUUGGUGAGGUUCAAUC - 43
• Evidence: experimental ; unknown

Mature aof-miR171b-3p

• Accession: MIMAT0049786
• Description: Asparagus officinalis aof-miR171b-3p mature miRNA
• Sequence: 85 - UUGAGCCGCGCCAAUAUCACU - 105
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 29093472
   The asparagus genome sheds light on the origin and evolution of a young Y chromosome
   Harkess A, Zhou J, Xu C, Bowers JE, Van der Hulst R, Ayyampalayam S, Mercati F, Riccardi P, McKain MR, Kakrana A, Tang H, Ray J, Groenendijk J, Arikit S, Mathioni SM, Nakano M, Shan H, Telgmann-Rauber A, Kanno A, Yue Z, Chen H, Li W, Chen Y, Xu X, Zhang Y
   Nat Commun (2017) 8:1279