Stem-loop aof-MIR171a

Accession

MI0040579

Description

Asparagus officinalis aof-MIR171a precursor miRNA

Literature search

2 open access papers mention aof-MIR171a
(6 sentences)

Sequence

43772 reads, 11170.0 reads per million, 10 experiments

uucuccauugaaauaguuacuaugaUGUUGGCCCGGUUCAUUCAGAuaccacuagcuaaggcacaaaagaaaagaaaaaguaauccuuaagccuuagauuuguguuuucUGAUUGAGCCGUGCCAAUAUCuuaguacucuuucauucuaucugca
........(((((.(((.((((.(((((((((.(((((((.(((((...(((...(((((((............................)))))))....)))...))))).))))))).))))))))).))))))).)))))...........

Structure

---uucuccau     u   u    u         C       U     uac   -uag       acaaaagaaaaga 
           ugaaa agu acua gaUGUUGGC CGGUUCA UCAGA   cac    cuaaggc             a
           ||||| ||| |||| ||||||||| ||||||| |||||   |||    |||||||              
           acuuu uca ugau CUAUAACCG GCCGAGU AGUcu   gug    gauuccg             a
acgucuaucuu     c   -    u         U       U     uuu   uuua       aauuccuaaugaa 

Annotation confidence High

Genome context

chr7: 95110467-95110621 [+]

Mature aof-miR171a-5p

• Accession: MIMAT0060736
• Description: Asparagus officinalis aof-miR171a-5p mature miRNA
• Sequence: 26 - UGUUGGCCCGGUUCAUUCAGA - 46
• Evidence: experimental ; unknown

Mature aof-miR171a-3p

• Accession: MIMAT0049785
• Description: Asparagus officinalis aof-miR171a-3p mature miRNA
• Sequence: 110 - UGAUUGAGCCGUGCCAAUAUC - 130
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 29093472
   The asparagus genome sheds light on the origin and evolution of a young Y chromosome
   Harkess A, Zhou J, Xu C, Bowers JE, Van der Hulst R, Ayyampalayam S, Mercati F, Riccardi P, McKain MR, Kakrana A, Tang H, Ray J, Groenendijk J, Arikit S, Mathioni SM, Nakano M, Shan H, Telgmann-Rauber A, Kanno A, Yue Z, Chen H, Li W, Chen Y, Xu X, Zhang Y
   Nat Commun (2017) 8:1279