Stem-loop aof-MIR169c

Accession

MI0040578

Description

Asparagus officinalis aof-MIR169c precursor miRNA

Literature search

1 open access papers mention aof-MIR169c
(1 sentences)

Sequence

7485 reads, 2173.0 reads per million, 9 experiments

auaucuuuggUAGCCAAGGAUGACUUGCCUauguugcuaguaguucucaaaaugugacuaaaucucauuuauauggggguucauAGGCAGUCUCCUUGGCUAcccuaagcggc
....(((.((((((((((((.((((.(((((((..(((..(((((..((...)).)))))...(((((....)))))))).)))))))))))))))))))))))..)))....

Structure

auau   -u            U    U       uu   ---------------ag     cu  a 
    cuu  ggUAGCCAAGGA GACU GCCUaug  gcu                 uaguu  ca  
    |||  |||||||||||| |||| |||||||  |||                 |||||  || a
    gaa  ccAUCGGUUCCU CUGA CGGAuac  ugg                 aucag  gu  
cggc   uc            -    -       -u   ggguauauuuacucuaa     -u  a 

Annotation confidence High

Genome context

chr10: 7883321-7883433 [+]

Mature aof-miR169c-5p

• Accession: MIMAT0049784
• Description: Asparagus officinalis aof-miR169c-5p mature miRNA
• Sequence: 11 - UAGCCAAGGAUGACUUGCCU - 30
• Evidence: experimental ; Illumina [1]

Mature aof-miR169c-3p

• Accession: MIMAT0060735
• Description: Asparagus officinalis aof-miR169c-3p mature miRNA
• Sequence: 85 - AGGCAGUCUCCUUGGCUA - 102
• Evidence: experimental ; unknown

References

1. PubMed ID: 29093472
   The asparagus genome sheds light on the origin and evolution of a young Y chromosome
   Harkess A, Zhou J, Xu C, Bowers JE, Van der Hulst R, Ayyampalayam S, Mercati F, Riccardi P, McKain MR, Kakrana A, Tang H, Ray J, Groenendijk J, Arikit S, Mathioni SM, Nakano M, Shan H, Telgmann-Rauber A, Kanno A, Yue Z, Chen H, Li W, Chen Y, Xu X, Zhang Y
   Nat Commun (2017) 8:1279