Stem-loop aof-MIR167c

Accession

MI0040573

Description

Asparagus officinalis aof-MIR167c precursor miRNA

Literature search

2 open access papers mention aof-MIR167c
(16 sentences)

Sequence

44123 reads, 18787.0 reads per million, 10 experiments

ugugagugcuUGAAGCUGCCAGCAUGAUCUGgucaucuaaaacuuagaucaauuaguuauauuuaugugagaaacuuuguuuugguuaucuuuaucauuaguacuacuacauagaguucuugacgucauuuugaugauuucuagcuuguuuacauauuauuuuauuuguugauaggauuugaggucuaauugcauagaauuuuguaagccugcauucauucucaucAGAUCAUCUUGCAGCUUCAAUcacucacu
.(((((((.((((((((((.((.((((((((((.((((((...))))))....((((..((((.(((.((((((((.......)))).))))...))).))))..))))..(((((.((.....((((...)))))).)))))((..(((((((....((((((..(((.(((.(((((...))))).))))))))))))..)))))))..))..........)))))))))))).)))))))))).))))))).

Structure

u       c          C  C          caucuaaaacuuagaucaauuaguuauauuuaugugagaaacuuuguuuugguuaucuuuaucauuaguacuacuacauagaguucuugacgucauuuugaugauuucua  uu       uauu      uu   u   a     u 
 gugagug uUGAAGCUGC AG AUGAUCUGgu                                                                                                              gc  guuuaca    auuuua  ugu gau ggauu  
 ||||||| |||||||||| || ||||||||||                                                                                                              ||  |||||||    ||||||  ||| ||| ||||| g
 cacucac AACUUCGACG UC UACUAGAcua                                                                                                              cg  cgaaugu    uaagau  acg uua ucugg  
u       U          U  -          ----------------------------------------------------------------------------------------------------cucuuacuua  uc       --uu      --   -   a     a 

Annotation confidence High

Genome context

chr6: 1977018-1977272 [+]

Mature aof-miR167c-5p

• Accession: MIMAT0049779
• Description: Asparagus officinalis aof-miR167c-5p mature miRNA
• Sequence: 11 - UGAAGCUGCCAGCAUGAUCUG - 31
• Evidence: experimental ; Illumina [1]

Mature aof-miR167c-3p

• Accession: MIMAT0060732
• Description: Asparagus officinalis aof-miR167c-3p mature miRNA
• Sequence: 227 - AGAUCAUCUUGCAGCUUCAAU - 247
• Evidence: experimental ; unknown

References

1. PubMed ID: 29093472
   The asparagus genome sheds light on the origin and evolution of a young Y chromosome
   Harkess A, Zhou J, Xu C, Bowers JE, Van der Hulst R, Ayyampalayam S, Mercati F, Riccardi P, McKain MR, Kakrana A, Tang H, Ray J, Groenendijk J, Arikit S, Mathioni SM, Nakano M, Shan H, Telgmann-Rauber A, Kanno A, Yue Z, Chen H, Li W, Chen Y, Xu X, Zhang Y
   Nat Commun (2017) 8:1279