Stem-loop aof-MIR167a

Accession

MI0040571

Description

Asparagus officinalis aof-MIR167a precursor miRNA

Literature search

2 open access papers mention aof-MIR167a
(18 sentences)

Sequence

37706 reads, 14860.0 reads per million, 10 experiments

ggggaaugagUGAAGCUGCCAGCAUGAUCUAgcuuugauugacacaaaucuuauauauuauauugaacaccaaaaauuaagggucaacccuugcuaGGUCAUGCUCCGGCAGCCUCACUucuucccuc
((((((.((((((.(((((((((((((((((((...((((......))))............................(((((....))))))))))))))))))..)))))).)))))).)))))).

Structure

-      u      A      --             uuugauugacacaaaucuuauauauuauauugaacaccaaaaauu     u 
 ggggaa gagUGA GCUGCC  AGCAUGAUCUAgc                                             aaggg c
 |||||| |||||| ||||||  |||||||||||||                                             |||||  
 ucccuu uUCACU CGACGG  UCGUACUGGaucg                                             uuccc a
c      c      C      CC             ---------------------------------------------     a 

Annotation confidence High

Genome context

chr8: 68461694-68461821 [-]

Mature aof-miR167a-5p

• Accession: MIMAT0049777
• Description: Asparagus officinalis aof-miR167a-5p mature miRNA
• Sequence: 11 - UGAAGCUGCCAGCAUGAUCUA - 31
• Evidence: experimental ; Illumina [1]

Mature aof-miR167a-3p

• Accession: MIMAT0060730
• Description: Asparagus officinalis aof-miR167a-3p mature miRNA
• Sequence: 97 - GGUCAUGCUCCGGCAGCCUCACU - 119
• Evidence: experimental ; unknown

References

1. PubMed ID: 29093472
   The asparagus genome sheds light on the origin and evolution of a young Y chromosome
   Harkess A, Zhou J, Xu C, Bowers JE, Van der Hulst R, Ayyampalayam S, Mercati F, Riccardi P, McKain MR, Kakrana A, Tang H, Ray J, Groenendijk J, Arikit S, Mathioni SM, Nakano M, Shan H, Telgmann-Rauber A, Kanno A, Yue Z, Chen H, Li W, Chen Y, Xu X, Zhang Y
   Nat Commun (2017) 8:1279