Stem-loop aof-MIR166d

Accession

MI0040570

Description

Asparagus officinalis aof-MIR166d precursor miRNA

Literature search

1 open access papers mention aof-MIR166d
(6 sentences)

Sequence

1179164 reads, 352351.0 reads per million, 10 experiments

auuaaaggaagcuuucucuuugaggGGAAUGUUGUCUGGCUCGAGGccaucuuuucugauccauuacccugaucauuucucuuuucuuuucuauucauuuauaucagauuuuaaaagaucaacaacccguuucucaauuuauauuguaaauuaagacuccaugagagagaucgaucUCGGACCAGGCUUCAUUCCCCucaaucacagcuuccaaccccaucu
......(((((((......((((((((((((..((((((.(((((((.(((((((.(((((.........)))))....((((((....(((((........)).)))....)))))).............(((.(((((((...))))))).)))........))))))).).)))))).))))))..))))))))))))....)))))))..........

Structure

----auuaaa       uucucu            UU      C      - c       ----------------------cugauccauuacccugaucauuuc      cuuu   -  uca 
          ggaagcu      uugaggGGAAUG  GUCUGG UCGAGG c aucuuuu                                              ucuuuu    ucu au   u
          |||||||      ||||||||||||  |||||| |||||| | |||||||                                              ||||||    ||| ||    
          ccuucga      aacuCCCCUUAC  CGGACC GGCUcu g uagagag                                              agaaaa    aga ua   u
ucuaccccaa       --cacu            UU      A      a c       aguaccucagaauuaaauguuauauuuaacucuuugcccaacaacu      uuuu   c  uau 

Annotation confidence High

Genome context

chr1: 23336729-23336950 [-]

Mature aof-miR166d-5p

• Accession: MIMAT0060729
• Description: Asparagus officinalis aof-miR166d-5p mature miRNA
• Sequence: 26 - GGAAUGUUGUCUGGCUCGAGG - 46
• Evidence: experimental ; unknown

Mature aof-miR166d-3p

• Accession: MIMAT0049776
• Description: Asparagus officinalis aof-miR166d-3p mature miRNA
• Sequence: 177 - UCGGACCAGGCUUCAUUCCCC - 197
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 29093472
   The asparagus genome sheds light on the origin and evolution of a young Y chromosome
   Harkess A, Zhou J, Xu C, Bowers JE, Van der Hulst R, Ayyampalayam S, Mercati F, Riccardi P, McKain MR, Kakrana A, Tang H, Ray J, Groenendijk J, Arikit S, Mathioni SM, Nakano M, Shan H, Telgmann-Rauber A, Kanno A, Yue Z, Chen H, Li W, Chen Y, Xu X, Zhang Y
   Nat Commun (2017) 8:1279