Stem-loop aof-MIR166c

Accession

MI0040569

Description

Asparagus officinalis aof-MIR166c precursor miRNA

Literature search

1 open access papers mention aof-MIR166c
(6 sentences)

Sequence

150350 reads, 45749.0 reads per million, 10 experiments

uucauuuguugagguuagguuaaggGGAAUGUUGUCUGGCUCGAGGuaauuuuucguuuuaauacuaaaauaaucUCGGACCAGGCUUCAUCCCCCucaacgcaccaacacuacuugcucu
......(((((..((...(((.(((((.(((..((((((.(((((((.(((((..((......)).))))).))))))).))))))..))).))))).)))))..)))))...........

Structure

-----uucauu     ag  uag   a     A   UU      C       a     uc  uu 
           uguug  gu   guu aggGG AUG  GUCUGG UCGAGGu auuuu  gu  u
           |||||  ||   ||| ||||| |||  |||||| ||||||| |||||  ||   
           acaac  cg   caa uCCCC UAC  CGGACC GGCUcua uaaaa  ca  a
ucucguucauc     ca  ---   c     C   UU      A       a     -u  ua 

Annotation confidence High

Genome context

chr7: 146958519-146958639 [+]

Mature aof-miR166c-5p

• Accession: MIMAT0060728
• Description: Asparagus officinalis aof-miR166c-5p mature miRNA
• Sequence: 26 - GGAAUGUUGUCUGGCUCGAGG - 46
• Evidence: experimental ; unknown

Mature aof-miR166c-3p

• Accession: MIMAT0049775
• Description: Asparagus officinalis aof-miR166c-3p mature miRNA
• Sequence: 76 - UCGGACCAGGCUUCAUCCCCC - 96
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 29093472
   The asparagus genome sheds light on the origin and evolution of a young Y chromosome
   Harkess A, Zhou J, Xu C, Bowers JE, Van der Hulst R, Ayyampalayam S, Mercati F, Riccardi P, McKain MR, Kakrana A, Tang H, Ray J, Groenendijk J, Arikit S, Mathioni SM, Nakano M, Shan H, Telgmann-Rauber A, Kanno A, Yue Z, Chen H, Li W, Chen Y, Xu X, Zhang Y
   Nat Commun (2017) 8:1279