Stem-loop aof-MIR166b

Accession

MI0040568

Description

Asparagus officinalis aof-MIR166b precursor miRNA

Literature search

1 open access papers mention aof-MIR166b
(6 sentences)

Sequence

537661 reads, 150997.0 reads per million, 10 experiments

ugaagaaggaaaguuggguguuuggAAUGAAGUUUGAUCCAAGAUCuuuucgccauugaucuuguuuucagucccauauauauuuuaaaaaaaagauaccgggguaaguuuuauuccaauauuuuagggccagaUCUCGGACCAGGCUUCAUUCUucacaccuuacuuuuuauugcaaau
.......(((((((.((((((..(((((((((((((.(((.((((((....((((((((........)))))....................((((((..(((((((...)))))))..))))))..))).)))))).))).)))))))))))))..)))))).))))))).........

Structure

--ugaagaa       u      uu             A   A      uuuc   auugaucuuguuuucagucccauauauauuuuaaaaaa      cc       g 
         ggaaagu gggugu  ggAAUGAAGUUUG UCC AGAUCu    gcc                                      aagaua  gggguaa  
         ||||||| ||||||  ||||||||||||| ||| ||||||    |||                                      ||||||  ||||||| u
         uuuuuca uccaca  UCUUACUUCGGAC AGG UCUaga    cgg                                      uuuuau  ccuuauu  
uaaacguua       u      cu             C   C      ---c   ------------------------------------ga      aa       u 

Annotation confidence High

Genome context

chr7: 138024222-138024401 [-]

Mature aof-miR166b-5p

• Accession: MIMAT0060727
• Description: Asparagus officinalis aof-miR166b-5p mature miRNA
• Sequence: 26 - AAUGAAGUUUGAUCCAAGAUC - 46
• Evidence: experimental ; unknown

Mature aof-miR166b-3p

• Accession: MIMAT0049774
• Description: Asparagus officinalis aof-miR166b-3p mature miRNA
• Sequence: 135 - UCUCGGACCAGGCUUCAUUCU - 155
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 29093472
   The asparagus genome sheds light on the origin and evolution of a young Y chromosome
   Harkess A, Zhou J, Xu C, Bowers JE, Van der Hulst R, Ayyampalayam S, Mercati F, Riccardi P, McKain MR, Kakrana A, Tang H, Ray J, Groenendijk J, Arikit S, Mathioni SM, Nakano M, Shan H, Telgmann-Rauber A, Kanno A, Yue Z, Chen H, Li W, Chen Y, Xu X, Zhang Y
   Nat Commun (2017) 8:1279