Stem-loop aof-MIR166a

Accession

MI0040567

Description

Asparagus officinalis aof-MIR166a precursor miRNA

Literature search

1 open access papers mention aof-MIR166a
(6 sentences)

Sequence

902350 reads, 280603.0 reads per million, 10 experiments

gagaaaggaaaguuuggguguuuggAAUGAAGUUUGAUCCAAGAUCuuuuaauauuaaugauccuaaugaguggcuaauuaagagaUCUCGGACCAGGCUUCAUUCCucacaccuugcuuuuucauuacaga
(((((((.(......((((((..(((((((((((((.(((.((((((((((((........((.....)).......)))))))))))).))).)))))))))))))..))))))).)))))))........

Structure

--------       g aaguuu      uu             A   A            auuaauga  c 
        gagaaag a      gggugu  ggAAUGAAGUUUG UCC AGAUCuuuuaau        uc u
        ||||||| |      ||||||  ||||||||||||| ||| ||||||||||||        || a
        cuuuuuc u      uccaca  CCUUACUUCGGAC AGG UCUagagaauua        ag a
agacauua       g ------      cu             C   C            -aucggug  u 

Annotation confidence High

Genome context

chr3: 10001292-10001423 [-]

Mature aof-miR166a-5p

• Accession: MIMAT0060726
• Description: Asparagus officinalis aof-miR166a-5p mature miRNA
• Sequence: 26 - AAUGAAGUUUGAUCCAAGAUC - 46
• Evidence: experimental ; unknown

Mature aof-miR166a-3p

• Accession: MIMAT0049773
• Description: Asparagus officinalis aof-miR166a-3p mature miRNA
• Sequence: 87 - UCUCGGACCAGGCUUCAUUCC - 107
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 29093472
   The asparagus genome sheds light on the origin and evolution of a young Y chromosome
   Harkess A, Zhou J, Xu C, Bowers JE, Van der Hulst R, Ayyampalayam S, Mercati F, Riccardi P, McKain MR, Kakrana A, Tang H, Ray J, Groenendijk J, Arikit S, Mathioni SM, Nakano M, Shan H, Telgmann-Rauber A, Kanno A, Yue Z, Chen H, Li W, Chen Y, Xu X, Zhang Y
   Nat Commun (2017) 8:1279