Stem-loop aof-MIR164

Accession

MI0040566

Description

Asparagus officinalis aof-MIR164 precursor miRNA

Literature search

1 open access papers mention aof-MIR164
(1 sentences)

Sequence

63858 reads, 15614.0 reads per million, 10 experiments

gcauugagagguggcuuguggaggaUGGAGAAGCAGGGCACGUGCAuuaccaucuaacgcacgugaguacuuaguuggauaguucuuCAUGUGCUCAUCUUCUCCAUCaugcacauccuaccuaaaguuucaa
...(((((((((((..((((.(.((((((((((..(((((((((....((.(((((((...............))))))).))....)))))))))..)))))))))).).))))..)))))).....)))))

Structure

gca     -----      cu    g g          CA         CAuu  c       gcacgu 
   uugag     aggugg  ugug a gaUGGAGAAG  GGGCACGUG    ac aucuaac      g
   |||||     ||||||  |||| | ||||||||||  |||||||||    || |||||||      a
   aacuu     uccauc  acac u CUACCUCUUC  CUCGUGUAC    ug uagguug      g
---     ugaaa      cu    g a          UA         uucu  a       auucau 

Annotation confidence High

Genome context

chr5: 11050131-11050263 [+]

Mature aof-miR164-5p

• Accession: MIMAT0049772
• Description: Asparagus officinalis aof-miR164-5p mature miRNA
• Sequence: 26 - UGGAGAAGCAGGGCACGUGCA - 46
• Evidence: experimental ; Illumina [1]

Mature aof-miR164-3p

• Accession: MIMAT0060725
• Description: Asparagus officinalis aof-miR164-3p mature miRNA
• Sequence: 88 - CAUGUGCUCAUCUUCUCCAUC - 108
• Evidence: experimental ; unknown

References

1. PubMed ID: 29093472
   The asparagus genome sheds light on the origin and evolution of a young Y chromosome
   Harkess A, Zhou J, Xu C, Bowers JE, Van der Hulst R, Ayyampalayam S, Mercati F, Riccardi P, McKain MR, Kakrana A, Tang H, Ray J, Groenendijk J, Arikit S, Mathioni SM, Nakano M, Shan H, Telgmann-Rauber A, Kanno A, Yue Z, Chen H, Li W, Chen Y, Xu X, Zhang Y
   Nat Commun (2017) 8:1279