Stem-loop aof-MIR160c

Accession

MI0040565

Description

Asparagus officinalis aof-MIR160c precursor miRNA

Literature search

1 open access papers mention aof-MIR160c
(1 sentences)

Sequence

70839 reads, 19891.0 reads per million, 10 experiments

uucaugagaaUGCCUGGCUCCCUGUAUGCCAcacgugugcacuaauucuugcugcuugaauuugguuacugcgggugGCGUGCGAGGAGCCAAGCAUucaguaccc
.......((((((.(((((((.((((((((((.((((((.((((((((.........))).)))))))).))).)))))))))).))))))).)))))).......

Structure

uucauga      C       C          a   -   c     -   uug 
       gaaUGC UGGCUCC UGUAUGCCAc cgu gug acuaa uuc   c
       |||||| ||||||| |||||||||| ||| ||| ||||| |||   u
       cuUACG ACCGAGG GCGUGCGgug gcg cau ugguu aag   g
cccauga      A       A          g   u   -     u   uuc 

Annotation confidence High

Genome context

chr6: 75997119-75997224 [-]

Mature aof-miR160c-5p

• Accession: MIMAT0049771
• Description: Asparagus officinalis aof-miR160c-5p mature miRNA
• Sequence: 11 - UGCCUGGCUCCCUGUAUGCCA - 31
• Evidence: experimental ; Illumina [1]

Mature aof-miR160c-3p

• Accession: MIMAT0060724
• Description: Asparagus officinalis aof-miR160c-3p mature miRNA
• Sequence: 78 - GCGUGCGAGGAGCCAAGCAU - 97
• Evidence: experimental ; unknown

References

1. PubMed ID: 29093472
   The asparagus genome sheds light on the origin and evolution of a young Y chromosome
   Harkess A, Zhou J, Xu C, Bowers JE, Van der Hulst R, Ayyampalayam S, Mercati F, Riccardi P, McKain MR, Kakrana A, Tang H, Ray J, Groenendijk J, Arikit S, Mathioni SM, Nakano M, Shan H, Telgmann-Rauber A, Kanno A, Yue Z, Chen H, Li W, Chen Y, Xu X, Zhang Y
   Nat Commun (2017) 8:1279