Stem-loop aof-MIR160b

Accession

MI0040564

Description

Asparagus officinalis aof-MIR160b precursor miRNA

Literature search

2 open access papers mention aof-MIR160b
(2 sentences)

Sequence

163390 reads, 48608.0 reads per million, 10 experiments

gggaucgaugUGCCUGGUUCCCUGUAUGCCAcccagguacccccaaucucaugcugccuagguuggguauuuugggUGGCGUGCAUGGAAUCAAGCAugucuuaauuaauuugccuuugaucucc
(((((((((((((.(((((((.(((((((((((((((....((((((((..........))))))))...))))))))))))))).))))))).))))))).................)))))).

Structure

-      -----------------       C       C               uacc        caug 
 gggauc                 gaugUGC UGGUUCC UGUAUGCCAcccagg    cccaaucu    c
 ||||||                 ||||||| ||||||| |||||||||||||||    ||||||||     
 cucuag                 cuguACG ACUAAGG ACGUGCGGUggguuu    ggguugga    u
c      uuuccguuuaauuaauu       A       U               -uau        uccg 

Annotation confidence High

Genome context

chr6: 483226-483350 [-]

Mature aof-miR160b-5p

• Accession: MIMAT0049770
• Description: Asparagus officinalis aof-miR160b-5p mature miRNA
• Sequence: 11 - UGCCUGGUUCCCUGUAUGCCA - 31
• Evidence: experimental ; Illumina [1]

Mature aof-miR160b-3p

• Accession: MIMAT0060723
• Description: Asparagus officinalis aof-miR160b-3p mature miRNA
• Sequence: 77 - UGGCGUGCAUGGAAUCAAGCA - 97
• Evidence: experimental ; unknown

References

1. PubMed ID: 29093472
   The asparagus genome sheds light on the origin and evolution of a young Y chromosome
   Harkess A, Zhou J, Xu C, Bowers JE, Van der Hulst R, Ayyampalayam S, Mercati F, Riccardi P, McKain MR, Kakrana A, Tang H, Ray J, Groenendijk J, Arikit S, Mathioni SM, Nakano M, Shan H, Telgmann-Rauber A, Kanno A, Yue Z, Chen H, Li W, Chen Y, Xu X, Zhang Y
   Nat Commun (2017) 8:1279