Stem-loop aof-MIR159

Accession

MI0040562

Description

Asparagus officinalis aof-MIR159 precursor miRNA

Literature search

2 open access papers mention aof-MIR159
(16 sentences)

Sequence

958419 reads, 344829.0 reads per million, 10 experiments

cauaaaauuguagguuuuaagaguggagcuccuugaaguccaaauauggguauuggagggguggaucgAGCUGCUUUGUCAUGGAUUCCacugcccuauuccuauauguuauuuucaucuugagagaaaaaaaaaggagggggggagaaagaaaaagaucauguucaugggauagguuuguggcuugcaugacucaggagcuucauuaaccucuucuuacccuucUUUGGAUUGAAGGGAGCUCUAcacguuaaucuuucuaauuuuuucu
...(((((((.(((((....(.((((((((((((..((((((((...(((((..((((((((.(((.(((((.((..((((((.(..((((...((((((((.(((((((.(((((.((((.......................))))..))))).)).)))))....))))))))...))))..).))))))..)).))))).))).)))))))).)))))...))))))))..)))))))))))).)...)))))...)))))))....

Structure

-cau       --u     uuaa a            ga        uau     uu        g   c     G  UU      G UU    ugc        ---u     -  a     -a    gagagaaaaa 
    aaaauug   agguu    g guggagcuccuu  aguccaaa   gggua  ggaggggu gau gAGCU CU  GUCAUG A  CCac   ccuauucc    auaug uu uuuuc  ucuu          a
    |||||||   |||||    | ||||||||||||  ||||||||   |||||  |||||||| ||| ||||| ||  |||||| |  ||||   ||||||||    ||||| || |||||  ||||          a
    uuuuaau   ucuaa    c cAUCUCGAGGGA  UUAGGUUU   cccau  cuucucca uua uucga ga  caguac u  ggug   ggauaggg    uguac ag aaaag  agag          a
ucuu       cuu     -uug a            AG        cuu     -u        a   c     g  cu      g uc    uuu        uacu     u  a     aa    ggggggagga 

Annotation confidence Low

Genome context

chr6: 14115357-14115627 [+]

Mature aof-miR159-5p

• Accession: MIMAT0060722
• Description: Asparagus officinalis aof-miR159-5p mature miRNA
• Sequence: 69 - AGCUGCUUUGUCAUGGAUUCC - 89
• Evidence: experimental ; unknown

Mature aof-miR159-3p

• Accession: MIMAT0049768
• Description: Asparagus officinalis aof-miR159-3p mature miRNA
• Sequence: 226 - UUUGGAUUGAAGGGAGCUCUA - 246
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 29093472
   The asparagus genome sheds light on the origin and evolution of a young Y chromosome
   Harkess A, Zhou J, Xu C, Bowers JE, Van der Hulst R, Ayyampalayam S, Mercati F, Riccardi P, McKain MR, Kakrana A, Tang H, Ray J, Groenendijk J, Arikit S, Mathioni SM, Nakano M, Shan H, Telgmann-Rauber A, Kanno A, Yue Z, Chen H, Li W, Chen Y, Xu X, Zhang Y
   Nat Commun (2017) 8:1279