Stem-loop aof-MIR156c

Accession

MI0040561

Description

Asparagus officinalis aof-MIR156c precursor miRNA

Literature search

3 open access papers mention aof-MIR156c
(9 sentences)

Sequence

cugcacuauaUGACAGAAGAGAGAGAGCACagcccgacaccggcgaaaagggcgucgcuguugcugggucugggcucucuuaucuuucugucauauacaauau
......((((((((((((((((((((((.(((((((.((.((((((........)))))).)).)))).))).)))))))).)).))))))))))))......

Structure

cugcac            -  -        A   -    a  c      aaa 
      uauaUGACAGAA GA GAGAGAGC Cag cccg ca cggcga   g
      |||||||||||| || |||||||| ||| |||| || ||||||    
      auauacugucuu cu uucucucg guc gggu gu gucgcu   g
uauaac            u  a        g   u    c  u      gcg 

Annotation confidence Not enough data

Genome context

chr5: 94483335-94483437 [-]

Mature aof-miR156c

• Accession: MIMAT0049767
• Description: Asparagus officinalis aof-miR156c mature miRNA
• Sequence: 11 - UGACAGAAGAGAGAGAGCAC - 30
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 29093472
   The asparagus genome sheds light on the origin and evolution of a young Y chromosome
   Harkess A, Zhou J, Xu C, Bowers JE, Van der Hulst R, Ayyampalayam S, Mercati F, Riccardi P, McKain MR, Kakrana A, Tang H, Ray J, Groenendijk J, Arikit S, Mathioni SM, Nakano M, Shan H, Telgmann-Rauber A, Kanno A, Yue Z, Chen H, Li W, Chen Y, Xu X, Zhang Y
   Nat Commun (2017) 8:1279