Stem-loop aof-MIR399c

Accession

MI0040554

Description

Asparagus officinalis aof-MIR399c precursor miRNA

Literature search

1 open access papers mention aof-MIR399c
(1 sentences)

Sequence

2103 reads, 528.0 reads per million, 10 experiments

gaauugguuaagcgaggucaucgaaGGGCACCUCGUCAUUGGCAGGcgacaauugugacaggaucaaaagguaauuaguugaucaguacucUGCCAAAGGAGAGUUGCCCUUugacugcuucagcuuacagucucgc
((((((..((((((((((..((((((((((.(((.((.((((((((........(((....((((((...........))))))..))))))))))).)).))).))))))))))..))))).))))))))).))..

Structure

--  -    gu     -     ca          C   G  A        cgacaauu   acag      aagg 
  ga auug  uaagc gaggu  ucgaaGGGCA CUC UC UUGGCAGG        gug    gaucaa    u
  || ||||  ||||| |||||  |||||||||| ||| || ||||||||        |||    ||||||    a
  cu ugac  auucg cuucg  aguUUCCCGU GAG GG AACCGUcu        cau    cuaguu    a
cg  c    --     a     uc          U   A  A        --------   --ga      gauu 

Annotation confidence High

Genome context

chr4: 123264002-123264138 [-]

Mature aof-miR399c-5p

• Accession: MIMAT0049760
• Description: Asparagus officinalis aof-miR399c-5p mature miRNA
• Sequence: 26 - GGGCACCUCGUCAUUGGCAGG - 46
• Evidence: experimental ; Illumina [1]

Mature aof-miR399c-3p

• Accession: MIMAT0060719
• Description: Asparagus officinalis aof-miR399c-3p mature miRNA
• Sequence: 92 - UGCCAAAGGAGAGUUGCCCUU - 112
• Evidence: experimental ; unknown

References

1. PubMed ID: 29093472
   The asparagus genome sheds light on the origin and evolution of a young Y chromosome
   Harkess A, Zhou J, Xu C, Bowers JE, Van der Hulst R, Ayyampalayam S, Mercati F, Riccardi P, McKain MR, Kakrana A, Tang H, Ray J, Groenendijk J, Arikit S, Mathioni SM, Nakano M, Shan H, Telgmann-Rauber A, Kanno A, Yue Z, Chen H, Li W, Chen Y, Xu X, Zhang Y
   Nat Commun (2017) 8:1279