Stem-loop aof-MIR12171

Accession

MI0040550

Description

Asparagus officinalis aof-MIR12171 precursor miRNA

Sequence

2874 reads, 1401.0 reads per million, 10 experiments

uuugcucucaUCCUUGUAGAUGAGUUGUGCAaggguggucuuucccauuccucugugucucauuauguggaaacgaguguguuaauguugcuuucuuccucaucugcaacgggcgucauccgaggaaagugcaccagauguuaugcgcacaaauuaugagggugguaagguaacaucucucuugUUCCAUAAUGGGCCUCAGAGgaauggggaaaacauccuugcacaacuugucuauaaaaugagagcaca
..(((((((((..((((((((((((((((((((((((...(((((((((((((((.(.(((((..(((((((.((((.(.(...(((((((((((((((((((.......(.((((((((...((........)).))))..)))).).......))))))).)).))))))))))).).)))))))))))))))).).)))))))))))))))..)))))))))))))))))))))))).)))))))))..

Structure

uu         CC                        guc               u u     ua       a    u u uua          -  -       cugcaac g    --    cga  aaa 
  ugcucucaU  UUGUAGAUGAGUUGUGCAagggug   uuucccauuccucug g cucau  uguggaa cgag g g   auguugcuuu cu uccucau       g gcgu  cauc   gg   g
  |||||||||  ||||||||||||||||||||||||   ||||||||||||||| | |||||  ||||||| |||| | |   |||||||||| || |||||||       | ||||  ||||   ||    
  acgagagua  aauaucuguucaacacguuccuac   aagggguaagGAGAC C GGGUA  AUACCUU guuc c c   uacaauggaa gg gggagua       c cgua  guag   cc   u
ac         -a                        -aa               U C     --       -    u u ---          u  u       uuaaaca g    uu    --a  acg 

Annotation confidence Low

Genome context

chr9: 67696405-67696656 [-]

Mature aof-miR12171-5p

• Accession: MIMAT0049756
• Description: Asparagus officinalis aof-miR12171-5p mature miRNA
• Sequence: 11 - UCCUUGUAGAUGAGUUGUGCA - 31
• Evidence: experimental ; Illumina [1]

Mature aof-miR12171-3p

• Accession: MIMAT0060718
• Description: Asparagus officinalis aof-miR12171-3p mature miRNA
• Sequence: 185 - UUCCAUAAUGGGCCUCAGAG - 204
• Evidence: experimental ; unknown

References

1. PubMed ID: 29093472
   The asparagus genome sheds light on the origin and evolution of a young Y chromosome
   Harkess A, Zhou J, Xu C, Bowers JE, Van der Hulst R, Ayyampalayam S, Mercati F, Riccardi P, McKain MR, Kakrana A, Tang H, Ray J, Groenendijk J, Arikit S, Mathioni SM, Nakano M, Shan H, Telgmann-Rauber A, Kanno A, Yue Z, Chen H, Li W, Chen Y, Xu X, Zhang Y
   Nat Commun (2017) 8:1279