Stem-loop aof-MIR12167

Accession

MI0040546

Description

Asparagus officinalis aof-MIR12167 precursor miRNA

Sequence

augaguaugagguggcggcucauuuagcuaaaugagcaaccaagaggugaagugacgagauccauaucuuugaugugacuagcaagcugaaucucacuacaugauuaucucuccuuagcucaUUUAGUAAAAUUAGUCGUCACUucauacccca
....((((((((((((((((.((((.(((((((((((.....((((((((.(((..(((((.((((((...))))))..(((....))).)))))....)))..)))))))).....))))))))))).)))).))))))))))))))))....

Structure

auga                c    a           aacca        -a   --ac     ------------c      u 
    guaugagguggcggcu auuu gcuaaaugagc     agagguga  gug    gagau             cauauc  
    |||||||||||||||| |||| |||||||||||     ||||||||  |||    |||||             |||||| u
    cauacuUCACUGCUGA UAAA UGAUUUacucg     ucucuauu  uac    cucua             guguag  
accc                U    A           auucc        ag   auca     agucgaacgauca      u 

Annotation confidence Not enough data

Genome context

chr4: 142504818-142504971 [-]

Mature aof-miR12167

• Accession: MIMAT0049752
• Description: Asparagus officinalis aof-miR12167 mature miRNA
• Sequence: 123 - UUUAGUAAAAUUAGUCGUCACU - 144
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 29093472
   The asparagus genome sheds light on the origin and evolution of a young Y chromosome
   Harkess A, Zhou J, Xu C, Bowers JE, Van der Hulst R, Ayyampalayam S, Mercati F, Riccardi P, McKain MR, Kakrana A, Tang H, Ray J, Groenendijk J, Arikit S, Mathioni SM, Nakano M, Shan H, Telgmann-Rauber A, Kanno A, Yue Z, Chen H, Li W, Chen Y, Xu X, Zhang Y
   Nat Commun (2017) 8:1279