Stem-loop aof-MIR12166

Accession

MI0040545

Description

Asparagus officinalis aof-MIR12166 precursor miRNA

Sequence

84377 reads, 21629.0 reads per million, 10 experiments

uuuuauuuaggguuuugaggagaggaaaagauuguuaggaguuauuAGAUUGGGUUUGGAUUGGAAAAAucuuguauaaaucaaguguuuuccaaaaccucccaaucuagUGAUUUCUAGCUGUCUAACCCucuccuuuuucgccucugcagucuc
.......((((((...(((((((((...((((.(((((((((((((((((((((...((.((((((((..((((.......))))..))))))))..)).))))))))))))))))))))).))))...)))))))))....))).))).......

Structure

uuuuauu   -   -uuu         aaa    u                     UUU  -A        Au    ua 
       uag ggu    gaggagagg   agau guuaggaguuauuAGAUUGGG   GG  UUGGAAAA  cuug  u
       ||| |||    |||||||||   |||| |||||||||||||||||||||   ||  ||||||||  ||||  a
       guc ccg    uuccucuCC   UCUG CGAUCUUUAGUgaucuaaccc   cc  aaccuuuu  gaac  a
cucugac   u   cuuu         CAA    U                     --u  aa        gu    ua 

Annotation confidence Low

Genome context

chr2: 12088721-12088876 [+]

Mature aof-miR12166-5p

• Accession: MIMAT0060717
• Description: Asparagus officinalis aof-miR12166-5p mature miRNA
• Sequence: 47 - AGAUUGGGUUUGGAUUGGAAAAA - 69
• Evidence: experimental ; unknown

Mature aof-miR12166-3p

• Accession: MIMAT0049751
• Description: Asparagus officinalis aof-miR12166-3p mature miRNA
• Sequence: 111 - UGAUUUCUAGCUGUCUAACCC - 131
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 29093472
   The asparagus genome sheds light on the origin and evolution of a young Y chromosome
   Harkess A, Zhou J, Xu C, Bowers JE, Van der Hulst R, Ayyampalayam S, Mercati F, Riccardi P, McKain MR, Kakrana A, Tang H, Ray J, Groenendijk J, Arikit S, Mathioni SM, Nakano M, Shan H, Telgmann-Rauber A, Kanno A, Yue Z, Chen H, Li W, Chen Y, Xu X, Zhang Y
   Nat Commun (2017) 8:1279