Stem-loop aof-MIR12164

Accession

MI0040543

Description

Asparagus officinalis aof-MIR12164 precursor miRNA

Sequence

18452 reads, 4263.0 reads per million, 10 experiments

aagggaccuguucguaagaguuguGGGUAUGAGACUUUCGGGGAaguguuuuuagccuuuugaagaaacugcuuacuUCCCGAAACUCCGCAUGCCCACgguuuuuacgagcuccuuucucuuc
((((((...((((((((((((((((((((((.((.(((((((.(((((.....(((..(((....)))..))))))))))))))).))..))))))))))))))))))))))))))))......

Structure

------      ccu                      -A  C       G     uuuuu   cu   g 
      aaggga   guucguaagaguuguGGGUAUG  GA UUUCGGG Aagug     agc  uuu a
      ||||||   ||||||||||||||||||||||  || ||||||| |||||     |||  |||  
      uuuccu   cgagcauuuuuggCACCCGUAC  CU AAAGCCC Uucau     ucg  aaa a
cuucuc      ---                      GC  C       -     -----   uc   g 

Annotation confidence Medium

Genome context

chr1: 113527974-113528097 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from aof-MIR12164

Mature aof-miR12164-5p

• Accession: MIMAT0060716
• Description: Asparagus officinalis aof-miR12164-5p mature miRNA
• Sequence: 25 - GGGUAUGAGACUUUCGGGGA - 44
• Evidence: experimental ; unknown

Mature aof-miR12164-3p

• Accession: MIMAT0049749
• Description: Asparagus officinalis aof-miR12164-3p mature miRNA
• Sequence: 78 - UCCCGAAACUCCGCAUGCCCAC - 99
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 29093472
   The asparagus genome sheds light on the origin and evolution of a young Y chromosome
   Harkess A, Zhou J, Xu C, Bowers JE, Van der Hulst R, Ayyampalayam S, Mercati F, Riccardi P, McKain MR, Kakrana A, Tang H, Ray J, Groenendijk J, Arikit S, Mathioni SM, Nakano M, Shan H, Telgmann-Rauber A, Kanno A, Yue Z, Chen H, Li W, Chen Y, Xu X, Zhang Y
   Nat Commun (2017) 8:1279