Stem-loop aof-MIR482c

Accession

MI0040542

Description

Asparagus officinalis aof-MIR482c precursor miRNA

Literature search

1 open access papers mention aof-MIR482c
(3 sentences)

Sequence

69296 reads, 14754.0 reads per million, 10 experiments

ggaagauggguuucuuggaauuaugGGAGUGGGCGGAUAGGCUAAAaauaucgaaaugauccccugaucaucgauauuauuguaauucuuuUUGCCUACUCCGCCCAUUCCCCugaucucaagucucauuuuuccccg
((((((((((...(((((.((((.((((((((((((((((((.(((((((((((..(((((....))))))))))))...........)))).))))).))))))))))))).)))).))))).))))))))))....

Structure

----          uuu     a    u             -     U    -----------       aa     c 
    ggaagauggg   cuugg auua gGGAGUGGGCGGA UAGGC AAAa           auaucga  ugauc c
    ||||||||||   ||||| |||| ||||||||||||| ||||| ||||           |||||||  |||||  
    cuuuuuacuc   gaacu uagu CCCUUACCCGCCU AUCCG Uuuu           uauagcu  acuag c
gccc          --u     c    C             C     U    cuuaauguuau       --     u 

Annotation confidence High

Genome context

chr1: 113528152-113528289 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from aof-MIR482c

Mature aof-miR482c-5p

• Accession: MIMAT0060715
• Description: Asparagus officinalis aof-miR482c-5p mature miRNA
• Sequence: 26 - GGAGUGGGCGGAUAGGCUAAA - 46
• Evidence: experimental ; unknown

Mature aof-miR482c-3p

• Accession: MIMAT0049748
• Description: Asparagus officinalis aof-miR482c-3p mature miRNA
• Sequence: 92 - UUGCCUACUCCGCCCAUUCCCC - 113
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 29093472
   The asparagus genome sheds light on the origin and evolution of a young Y chromosome
   Harkess A, Zhou J, Xu C, Bowers JE, Van der Hulst R, Ayyampalayam S, Mercati F, Riccardi P, McKain MR, Kakrana A, Tang H, Ray J, Groenendijk J, Arikit S, Mathioni SM, Nakano M, Shan H, Telgmann-Rauber A, Kanno A, Yue Z, Chen H, Li W, Chen Y, Xu X, Zhang Y
   Nat Commun (2017) 8:1279