Stem-loop aof-MIR12162

Accession

MI0040539

Description

Asparagus officinalis aof-MIR12162 precursor miRNA

Sequence

83 reads, 78.0 reads per million, 10 experiments

cugauaugguUUUAGUCUGAUUUAGUAAAAUaaagcacuugaagcuuucauuaaucuugauccaucagauuuucuuguuaaauuuguuaaagcacauuugaauuUGUCAUCAGUUGUUCAAGAucgaguguucuguuguuaaauucaaacaugcaacgauaucau
.((((((.(((.((((.((((((((...((((.(((((((((............((((((..((.(.(((.......((((((.(((....))).)))))).......))).).)).))))))))))))))).)))).))))).))).)).)).))).)))))).

Structure

c      g   U  -  C   -     UAA    a         agcuuucauuaa      uc  u a   uuucuug      u   u 
 ugauau guU UA GU UGA UUUAG   AAUa agcacuuga            ucuuga  ca c gau       uuaaau ugu a
 |||||| ||| || || ||| |||||   |||| |||||||||            ||||||  || | |||       |||||| |||  
 acuaua caa gu ca acu aaauu   uugu uugugagcu            AGAACU  GU G CUA       aguuua acg a
u      g   c  a  a   u     --g    c         ------------      -U  U A   CUGUuua      c   a 

Annotation confidence Low

Genome context

chr2: 81754789-81754953 [-]

Mature aof-miR12162-5p

• Accession: MIMAT0049745
• Description: Asparagus officinalis aof-miR12162-5p mature miRNA
• Sequence: 11 - UUUAGUCUGAUUUAGUAAAAU - 31
• Evidence: experimental ; Illumina [1]

Mature aof-miR12162-3p

• Accession: MIMAT0060714
• Description: Asparagus officinalis aof-miR12162-3p mature miRNA
• Sequence: 105 - UGUCAUCAGUUGUUCAAGA - 123
• Evidence: experimental ; unknown

References

1. PubMed ID: 29093472
   The asparagus genome sheds light on the origin and evolution of a young Y chromosome
   Harkess A, Zhou J, Xu C, Bowers JE, Van der Hulst R, Ayyampalayam S, Mercati F, Riccardi P, McKain MR, Kakrana A, Tang H, Ray J, Groenendijk J, Arikit S, Mathioni SM, Nakano M, Shan H, Telgmann-Rauber A, Kanno A, Yue Z, Chen H, Li W, Chen Y, Xu X, Zhang Y
   Nat Commun (2017) 8:1279