Stem-loop aof-MIR12159

Accession

MI0040536

Description

Asparagus officinalis aof-MIR12159 precursor miRNA

Sequence

2515 reads, 783.0 reads per million, 10 experiments

cgguuuuugggccgauauggugauucauugguuggcguggagaggccugguacgaguuggaccugccuugacaUCGGAUGCUUUGAUUGGCUAGuaaacauuuggccggguuaucuaauuUUCCGAGUGAAGAAUCGUUGCUacauagaacc
.((((((..(...(..(((((..((((((.......(((..(((((..(((.(......)))).)))))..)))((((......((((((((((.......)))))))....)))......))))))))))..)))))..)..)..))))))

Structure

c      ug gcc au     ga      gguuggcguggagaggccugguacgaguuggaccugccuugacaU    UGCUUU   ----       ua 
 gguuuu  g   g  auggu  uucauu                                             CGGA      GAU    UGGCUAG  a
 ||||||  |   |  |||||  ||||||                                             ||||      |||    |||||||  a
 ccaaga  c   C  UGCUA  AAGUGA                                             GCCU      cua    gccgguu  c
-      ua -aU GU     AG      ---------------------------------------------    Uuuaau   uugg       ua 

Annotation confidence Low

Genome context

chr3: 65662303-65662454 [+]

Mature aof-miR12159-5p

• Accession: MIMAT0060713
• Description: Asparagus officinalis aof-miR12159-5p mature miRNA
• Sequence: 74 - UCGGAUGCUUUGAUUGGCUAG - 94
• Evidence: experimental ; unknown

Mature aof-miR12159-3p

• Accession: MIMAT0049742
• Description: Asparagus officinalis aof-miR12159-3p mature miRNA
• Sequence: 121 - UUCCGAGUGAAGAAUCGUUGCU - 142
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 29093472
   The asparagus genome sheds light on the origin and evolution of a young Y chromosome
   Harkess A, Zhou J, Xu C, Bowers JE, Van der Hulst R, Ayyampalayam S, Mercati F, Riccardi P, McKain MR, Kakrana A, Tang H, Ray J, Groenendijk J, Arikit S, Mathioni SM, Nakano M, Shan H, Telgmann-Rauber A, Kanno A, Yue Z, Chen H, Li W, Chen Y, Xu X, Zhang Y
   Nat Commun (2017) 8:1279