Stem-loop aof-MIR12158

Accession

MI0040535

Description

Asparagus officinalis aof-MIR12158 precursor miRNA

Sequence

355 reads, 98.0 reads per million, 10 experiments

uagaaaaguaUUGGUAUCUGGAUUGUAUAGCucuauuaauccagugaagugaagaacauucaccggcaaucuguauuggguagcaugaauagcuucguaCAAUCCUAUCGCCUUCAAUUCAa
............(((....(((((((((((((.(((..((((((((..(((((.....)))))..........))))))))...)))...))))..)))))))))....)))..........

Structure

uagaaaaguaUU   AUCU         --    --c   -ua        --------aa     g 
            GGU    GGAUUGUAU  AGCu   uau   auccagug          gugaa a
            |||    |||||||||  ||||   |||   ||||||||          ||||| a
            CCG    CCUAACaug  ucga   gua   uggguuau          cacuu c
--aACUUAACUU   CUAU         cu    uaa   cga        gucuaacggc     a 

Annotation confidence Low

Genome context

chr6: 26208580-26208701 [-]

Mature aof-miR12158-5p

• Accession: MIMAT0049741
• Description: Asparagus officinalis aof-miR12158-5p mature miRNA
• Sequence: 11 - UUGGUAUCUGGAUUGUAUAGC - 31
• Evidence: experimental ; Illumina [1]

Mature aof-miR12158-3p

• Accession: MIMAT0060712
• Description: Asparagus officinalis aof-miR12158-3p mature miRNA
• Sequence: 100 - CAAUCCUAUCGCCUUCAAUUCA - 121
• Evidence: experimental ; unknown

References

1. PubMed ID: 29093472
   The asparagus genome sheds light on the origin and evolution of a young Y chromosome
   Harkess A, Zhou J, Xu C, Bowers JE, Van der Hulst R, Ayyampalayam S, Mercati F, Riccardi P, McKain MR, Kakrana A, Tang H, Ray J, Groenendijk J, Arikit S, Mathioni SM, Nakano M, Shan H, Telgmann-Rauber A, Kanno A, Yue Z, Chen H, Li W, Chen Y, Xu X, Zhang Y
   Nat Commun (2017) 8:1279