Stem-loop aof-MIR12152

Accession

MI0040529

Description

Asparagus officinalis aof-MIR12152 precursor miRNA

Sequence

1912 reads, 520.0 reads per million, 10 experiments

acaggcuggaGACACCCUAGGGUGUCUCagcgaggccgagacacccuugggugucucggccUUGGCCGAGACACUCUGGGGUgucucgcuug
.(((((..((((((((((((((((((((.((((((((((((((((....)))))))))))))).)).)))))))))))))))))))))))))

Structure

a     ug                    a  -              c 
 caggc  gaGACACCCUAGGGUGUCUC gc gaggccgagacacc u
 |||||  |||||||||||||||||||| || ||||||||||||||  
 guucg  cucugUGGGGUCUCACAGAG CG UUccggcucugugg u
-     --                    C  G              g 

Annotation confidence Low

Genome context

chr9: 58767349-58767440 [-]

Mature aof-miR12152-5p

• Accession: MIMAT0060711
• Description: Asparagus officinalis aof-miR12152-5p mature miRNA
• Sequence: 11 - GACACCCUAGGGUGUCUC - 28
• Evidence: experimental ; unknown

Mature aof-miR12152-3p

• Accession: MIMAT0049735
• Description: Asparagus officinalis aof-miR12152-3p mature miRNA
• Sequence: 62 - UUGGCCGAGACACUCUGGGGU - 82
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 29093472
   The asparagus genome sheds light on the origin and evolution of a young Y chromosome
   Harkess A, Zhou J, Xu C, Bowers JE, Van der Hulst R, Ayyampalayam S, Mercati F, Riccardi P, McKain MR, Kakrana A, Tang H, Ray J, Groenendijk J, Arikit S, Mathioni SM, Nakano M, Shan H, Telgmann-Rauber A, Kanno A, Yue Z, Chen H, Li W, Chen Y, Xu X, Zhang Y
   Nat Commun (2017) 8:1279