Stem-loop aof-MIR12148

Accession

MI0040525

Description

Asparagus officinalis aof-MIR12148 precursor miRNA

Sequence

6164 reads, 1683.0 reads per million, 10 experiments

aguuguucaaaugguagUUUUUUGUCAGUUUUCCUCCAAaaucgccuauuuaaaaucgucucuuaaauaggUGAUUUUAGGAGAAAACGGUCaaaaagcuucauuuugacagauuuc
..(((((.((((((.(((((((((.(.((((((.(((((((((((((((((((.........)))))))))))))))).))))))))).).))))))))))))))).))))).....

Structure

---ag     c      u         U A      C   -                aau 
     uuguu aaaugg agUUUUUUG C GUUUUC UCC AAaaucgccuauuuaa   c
     ||||| |||||| ||||||||| | |||||| ||| ||||||||||||||||   g
     gacag uuuacu ucgaaaaaC G CAAAAG AGG UUUUAGUggauaaauu   u
cuuua     u      -         U G      -   A                cuc 

Annotation confidence Medium

Genome context

chr5: 115011124-115011240 [-]

Mature aof-miR12148-5p

• Accession: MIMAT0060709
• Description: Asparagus officinalis aof-miR12148-5p mature miRNA
• Sequence: 18 - UUUUUUGUCAGUUUUCCUCCAA - 39
• Evidence: experimental ; unknown

Mature aof-miR12148-3p

• Accession: MIMAT0049731
• Description: Asparagus officinalis aof-miR12148-3p mature miRNA
• Sequence: 72 - UGAUUUUAGGAGAAAACGGUC - 92
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 29093472
   The asparagus genome sheds light on the origin and evolution of a young Y chromosome
   Harkess A, Zhou J, Xu C, Bowers JE, Van der Hulst R, Ayyampalayam S, Mercati F, Riccardi P, McKain MR, Kakrana A, Tang H, Ray J, Groenendijk J, Arikit S, Mathioni SM, Nakano M, Shan H, Telgmann-Rauber A, Kanno A, Yue Z, Chen H, Li W, Chen Y, Xu X, Zhang Y
   Nat Commun (2017) 8:1279