Stem-loop aof-MIR12144

Accession

MI0040521

Description

Asparagus officinalis aof-MIR12144 precursor miRNA

Sequence

677 reads, 205.0 reads per million, 10 experiments

gaucaccugcUUCACGGCGUUCUCGAACUCCucaacacgagcuuguagggacaaggaaucugaggaaacagaCUCUUGACCCGGAGUGAGugccgugauggguggaa
...(((((...((((((((..(((..(((((...(((......))).(((.(((((..((((......)))).))))).))))))))))))))))))).)))))...

Structure

gau     gcU        UU   GA     ucaacacgagcuugua   a     aa    ag 
   caccu   UCACGGCG  CUC  ACUCC                ggg caagg  ucug  g
   |||||   ||||||||  |||  |||||                ||| |||||  ||||   
   guggg   agugccgu  GAG  UGAGG                CCC GUUCU  agac  a
aag     --u        --   --     ----------------   A     -C    aa 

Annotation confidence Low

Genome context

chr4: 88136579-88136685 [-]

Mature aof-miR12144-5p

• Accession: MIMAT0049727
• Description: Asparagus officinalis aof-miR12144-5p mature miRNA
• Sequence: 11 - UUCACGGCGUUCUCGAACUCC - 31
• Evidence: experimental ; Illumina [1]

Mature aof-miR12144-3p

• Accession: MIMAT0060708
• Description: Asparagus officinalis aof-miR12144-3p mature miRNA
• Sequence: 73 - CUCUUGACCCGGAGUGAG - 90
• Evidence: experimental ; unknown

References

1. PubMed ID: 29093472
   The asparagus genome sheds light on the origin and evolution of a young Y chromosome
   Harkess A, Zhou J, Xu C, Bowers JE, Van der Hulst R, Ayyampalayam S, Mercati F, Riccardi P, McKain MR, Kakrana A, Tang H, Ray J, Groenendijk J, Arikit S, Mathioni SM, Nakano M, Shan H, Telgmann-Rauber A, Kanno A, Yue Z, Chen H, Li W, Chen Y, Xu X, Zhang Y
   Nat Commun (2017) 8:1279