Stem-loop aof-MIR12142

Accession

MI0040519

Description

Asparagus officinalis aof-MIR12142 precursor miRNA

Sequence

aaaaaacuccUAUUUUCGAGACAGUUGUAACugucucggaagcaugaucaacuuucuauuucugagacaguugcaacugccuuggaaacauggucaguuucag
...(((((((..((((((((.(((((((((((((((((((((...((.......))..))))))))))))))))))))).))))))))...))..)))))...

Structure

aaa     --  -UA        A                     cau  uc 
   aaacu  cc   UUUUCGAG CAGUUGUAACugucucggaag   ga  a
   |||||  ||   |||||||| |||||||||||||||||||||   ||  a
   uuuga  gg   aaagguuc gucaacguugacagagucuuu   cu  c
gac     cu  uac        c                     -au  uu 

Annotation confidence Not enough data

Genome context

chr7: 39587000-39587102 [-]

Mature aof-miR12142

• Accession: MIMAT0049725
• Description: Asparagus officinalis aof-miR12142 mature miRNA
• Sequence: 11 - UAUUUUCGAGACAGUUGUAAC - 31
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 29093472
   The asparagus genome sheds light on the origin and evolution of a young Y chromosome
   Harkess A, Zhou J, Xu C, Bowers JE, Van der Hulst R, Ayyampalayam S, Mercati F, Riccardi P, McKain MR, Kakrana A, Tang H, Ray J, Groenendijk J, Arikit S, Mathioni SM, Nakano M, Shan H, Telgmann-Rauber A, Kanno A, Yue Z, Chen H, Li W, Chen Y, Xu X, Zhang Y
   Nat Commun (2017) 8:1279