Stem-loop aof-MIR12139

Accession

MI0040516

Description

Asparagus officinalis aof-MIR12139 precursor miRNA

Sequence

auguuagugucgacaguguguuugauucaggcauuagcuuguccaaacauagagcaagccuacgccCGAAUCAAACACAUUGUCGAGaacgcuagca
.(((((((((((((((((((((((((((.(((.(..((((((.(.......).))))))..).))).)))))))))))))))))))...))))))))

Structure

a        ---                   a   a ua      c aa 
 uguuagug   ucgacaguguguuugauuc ggc u  gcuugu c  a
 ||||||||   ||||||||||||||||||| ||| |  |||||| |  c
 acgaucgc   AGCUGUUACACAAACUAAG ccg a  cgaacg g  a
-        aaG                   C   c uc      a au 

Annotation confidence Not enough data

Genome context

chr9: 56297302-56297398 [+]

Mature aof-miR12139

• Accession: MIMAT0049722
• Description: Asparagus officinalis aof-miR12139 mature miRNA
• Sequence: 67 - CGAAUCAAACACAUUGUCGAG - 87
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 29093472
   The asparagus genome sheds light on the origin and evolution of a young Y chromosome
   Harkess A, Zhou J, Xu C, Bowers JE, Van der Hulst R, Ayyampalayam S, Mercati F, Riccardi P, McKain MR, Kakrana A, Tang H, Ray J, Groenendijk J, Arikit S, Mathioni SM, Nakano M, Shan H, Telgmann-Rauber A, Kanno A, Yue Z, Chen H, Li W, Chen Y, Xu X, Zhang Y
   Nat Commun (2017) 8:1279