Stem-loop aof-MIR12138

Accession

MI0040515

Description

Asparagus officinalis aof-MIR12138 precursor miRNA

Sequence

1464 reads, 610.0 reads per million, 10 experiments

gugugagcaugggggaagcaugggugagcaugggaguagcauggggUUCCACCAUCUCGUGUCCCCCcauccuacgu
..(((.(.(((((((..(((((((((.(..(((((.(.......).)))))))))).))))).)))))))).)))..

Structure

gu   a c       aa     -    a ca     g ag 
  gug g auggggg  gcaug ggug g  uggga u  c
  ||| | |||||||  ||||| |||| |  ||||| |  a
  cau c uacCCCC  UGUGC CUAC C  ACCUU g  u
ug   c -       -C     U    - --     g gg 

Annotation confidence Not enough data

Genome context

chr6: 11597032-11597108 [-]

Mature aof-miR12138-3p

• Accession: MIMAT0049721
• Description: Asparagus officinalis aof-miR12138-3p mature miRNA
• Sequence: 47 - UUCCACCAUCUCGUGUCCCCC - 67
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 29093472
   The asparagus genome sheds light on the origin and evolution of a young Y chromosome
   Harkess A, Zhou J, Xu C, Bowers JE, Van der Hulst R, Ayyampalayam S, Mercati F, Riccardi P, McKain MR, Kakrana A, Tang H, Ray J, Groenendijk J, Arikit S, Mathioni SM, Nakano M, Shan H, Telgmann-Rauber A, Kanno A, Yue Z, Chen H, Li W, Chen Y, Xu X, Zhang Y
   Nat Commun (2017) 8:1279