Stem-loop csi-MIR169p

Accession

MI0039706

Description

Citrus sinensis csi-MIR169p precursor miRNA

Literature search

5 open access papers mention csi-MIR169p
(12 sentences)

Sequence

aguuuggUAGCCAAGGAUGACUUGCCUcaucuguccucaauggucuuucaaaaaauguugaacauuuauaaagcccuugugugguagcaggcaaucucauugacuaauuugacagac
.(((...(((.(((.((.((.((((((...((((((.(((.((.((((....((((((...))))))..)))))).))).).))))).)))))))))).))).)))....)))....

Structure

---a   -ugg   C   G  U  C      cau     - u   u  u    caaa      u 
    guu    UAG CAA GA GA UUGCCU   cuguc c caa gg cuuu    aaaugu  
    |||    ||| ||| || || ||||||   ||||| | ||| || ||||    |||||| g
    cag    auc guu cu cu aacgga   gaugg g guu cc gaaa    uuuaca  
caga   uuua   a   a  -  -      --c     u u   c  -    --ua      a 

Annotation confidence Not enough data

Genome context

chr2: 10984178-10984294 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from csi-MIR169p

Mature csi-miR169p-5p

• Accession: MIMAT0048996
• Description: Citrus sinensis csi-miR169p-5p mature miRNA
• Sequence: 8 - UAGCCAAGGAUGACUUGCCU - 27
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 28054378
   MicroRNA annotation of plant genomes - Do it right or not at all
   "Taylor RS, Tarver JE, Foroozani A, Donoghue PC"
   Bioessays (2017) 39:1600113