Stem-loop csi-MIR482e

Accession

MI0039692

Description

Citrus sinensis csi-MIR482e precursor miRNA

Literature search

4 open access papers mention csi-MIR482e
(6 sentences)

Sequence

ggaaagggcugaggcccguaagacauuuucGGUCAUGGGAGGAUUGGCGAaaaaaucuuucaauuuuaccauaaaguauauaagaugacgaugaugauuaaaugaaaucuuUUGCCAACUCCUCCCAUGCCGAugauuucuuaugguuucaauucuuuccaau
((((((((.(((((((.((((((.(((.((((.(((((((((((((((((((..(((((...((((((...))))))....))))).........((((......))))))))))))).)))))))))))))).))).))))))))))))).))))))))...

Structure

---        c       c      c   u    U          -         ---------------------aa     -uca      c 
   ggaaaggg ugaggcc guaaga auu ucGG CAUGGGAGGA UUGGCGAaa                       aucuu    auuuua  
   |||||||| ||||||| |||||| ||| |||| |||||||||| |||||||||                       |||||    |||||| c
   ccuuucuu acuuugg uauucu uag AGCC GUACCCUCCU AACCGUUuu                       uagaa    ugaaau  
uaa        a       -      u   u    -          C         cuaaaguaaauuaguaguagcag     uaua      a 

Annotation confidence Low

Genome context

chr2: 9926991-9927153 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from csi-MIR482e

Mature csi-miR482e-5p

• Accession: MIMAT0048973
• Description: Citrus sinensis csi-miR482e-5p mature miRNA
• Sequence: 31 - GGUCAUGGGAGGAUUGGCGA - 50
• Evidence: experimental ; Illumina [1]

Mature csi-miR482e-3p

• Accession: MIMAT0048974
• Description: Citrus sinensis csi-miR482e-3p mature miRNA
• Sequence: 112 - UUGCCAACUCCUCCCAUGCCGA - 133
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 28054378
   MicroRNA annotation of plant genomes - Do it right or not at all
   "Taylor RS, Tarver JE, Foroozani A, Donoghue PC"
   Bioessays (2017) 39:1600113