Stem-loop csi-MIR395c

Accession

MI0039664

Description

Citrus sinensis csi-MIR395c precursor miRNA

Literature search

4 open access papers mention csi-MIR395c
(26 sentences)

Sequence

aagaggcaaaagagucaguugguuccuggaguuccuccgagcacuucauuggggucauucagagaaaagucgucacccuaCUGAAGUGUUUGGGGGAACUCugguugccaccugacauuacaguuguaucc
..((.((((..(((((((.((((..(((((((((((((((((((((((.((((((......((......))...)))))).)))))))))))))))))))))))..)))).))))).))....)))).)).

Structure

aa  g    --aa  -     u    uc                       u      cauuca  ga 
  ga gcaa    ga gucag uggu  cuggaguuccuccgagcacuuca uggggu      ga  a
  || ||||    || ||||| ||||  ||||||||||||||||||||||| ||||||      ||   
  cu uguu    uu caguc accg  gguCUCAAGGGGGUUUGUGAAGU auccca      cu  a
-c  a    gaca  a     c    uu                       C      ---cug  ga 

Annotation confidence Low

Genome context

chr5: 25604742-25604872 [-]

Mature csi-miR395c-3p

• Accession: MIMAT0048926
• Description: Citrus sinensis csi-miR395c-3p mature miRNA
• Sequence: 81 - CUGAAGUGUUUGGGGGAACUC - 101
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 28054378
   MicroRNA annotation of plant genomes - Do it right or not at all
   "Taylor RS, Tarver JE, Foroozani A, Donoghue PC"
   Bioessays (2017) 39:1600113