Stem-loop csi-MIR393b

Accession

MI0039660

Description

Citrus sinensis csi-MIR393b precursor miRNA

Literature search

2 open access papers mention csi-MIR393b
(9 sentences)

Sequence

ugagaguucuugauuagugcagguggagagUUCCAAAGGGAUCGCAUUGAUCugaugauaacauuaaauuaaucacucaaacggguugauuuuauuauauauaugauuucuuucauuuuuagaUCAUGCGAUCCCUUCGGAAUUccccaucuauggcucuaaauuuuuauauau
((((((((......(((.((((((((.(((((((.((((((((((((.(((((((((((((.....((((((((.(......))))))))))))))))....((((......))))...)))))))))))))))))).))))))).))))))...)).))))))))))).....

Structure

-----        cuugau   u  ---      a       A            U      ---------------------       cauua        a uc 
     ugagaguu      uag gc   aggugg gagUUCC AAGGGAUCGCAU GAUCug                     augauaa     aauuaauc c  a
     ||||||||      ||| ||   |||||| ||||||| |||||||||||| ||||||                     |||||||     |||||||| |   
     auuuuuaa      auc cg   ucuacc cUUAAGG UUCCCUAGCGUA CUagau                     uauuauu     uuaguugg g  a
uauau        ------   u  gua      c       C            -      uuuuacuuucuuuaguauaua       -----        - ca 

Annotation confidence Not enough data

Genome context

chr9: 16703306-16703479 [-]

Mature csi-miR393b-5p

• Accession: MIMAT0048919
• Description: Citrus sinensis csi-miR393b-5p mature miRNA
• Sequence: 31 - UUCCAAAGGGAUCGCAUUGAUC - 52
• Evidence: experimental ; Illumina [1]

Mature csi-miR393b-3p

• Accession: MIMAT0048920
• Description: Citrus sinensis csi-miR393b-3p mature miRNA
• Sequence: 124 - UCAUGCGAUCCCUUCGGAAUU - 144
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 28054378
   MicroRNA annotation of plant genomes - Do it right or not at all
   "Taylor RS, Tarver JE, Foroozani A, Donoghue PC"
   Bioessays (2017) 39:1600113