Stem-loop csi-MIR169k

Accession

MI0039646

Description

Citrus sinensis csi-MIR169k precursor miRNA

Literature search

5 open access papers mention csi-MIR169k
(12 sentences)

Sequence

aggucuugcaugugggaaugaggguauguggugCAGCCAAGGAUGACUUGCCGGcaacauuggcauguugaucacuucauuuuugcuucauuagauaugacaccacuacauaaauguguuaacuaguucaucggcaagucaucucuggcuacaauacugccuccuucucucaugcuggauau
..((((.(((((.(((((.((((....(((.((.(((((.((((((((((((((.......((((...(((.....)))....))))..(((((...((((((............)))))).)))))...)))))))))))))).))))).)).)))..)))).))))).))))).))))..

Structure

ag    u     u     u    guau   g  C     A              caacauuggcauguugaucacuucauuuuugcuuc     aua      cacua 
  gucu gcaug gggaa gagg    gug ug AGCCA GGAUGACUUGCCGG                                   auuag   ugacac     c
  |||| ||||| ||||| ||||    ||| || ||||| ||||||||||||||                                   |||||   ||||||      
  uagg cguac cucuu cucc    cau ac ucggu ucuacugaacggcu                                   ugauc   auugug     a
ua    u     u     c    --gu   a  a     c              --------------------------------acu     --a      uaaau 

Annotation confidence Not enough data

Genome context

chr6: 20609191-20609372 [+]

Mature csi-miR169k-5p

• Accession: MIMAT0048900
• Description: Citrus sinensis csi-miR169k-5p mature miRNA
• Sequence: 34 - CAGCCAAGGAUGACUUGCCGG - 54
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 28054378
   MicroRNA annotation of plant genomes - Do it right or not at all
   "Taylor RS, Tarver JE, Foroozani A, Donoghue PC"
   Bioessays (2017) 39:1600113