Stem-loop csi-MIR169c

Accession

MI0039638

Description

Citrus sinensis csi-MIR169c precursor miRNA

Literature search

5 open access papers mention csi-MIR169c
(13 sentences)

Sequence

gccuuacaugaagagaggagaaauguuuguUAGCCAAGGAUGACUUGCCUgcgucaugcaagaggguuucgaguagcuauagaaaagcucuacuguuugguugcCAGGCAGUCUCCUUGGCUAAGcugacagccucuucucuuucaugcuaggcc
((((..((((((((((((((...((((.((((((((((((.((((.(((((((.((.(((..(((((((....((....))...)))))))..))).))..)).)))))))))))))))))).))).))))..)))))))).))))))..)))).

Structure

-    ua      -        aaa    u   -         U    U     -  -u  u   ag       cgag  g 
 gccu  caugaa gagaggag   uguu guU AGCCAAGGA GACU GCCUg cg  ca gca  aggguuu    ua c
 ||||  |||||| ||||||||   |||| ||| ||||||||| |||| ||||| ||  || |||  |||||||    ||  
 cgga  guacuu cucuucuc   acag cGA UCGGUUCCU CUGA CGGAC gu  gu ugu  ucucgaa    au u
c    uc      u        -cg    u   A         -    -     c  ug  u   ca       -aag  a 

Annotation confidence Not enough data

Genome context

chr2: 10985954-10986108 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from csi-MIR169c

Mature csi-miR169c-5p

• Accession: MIMAT0048889
• Description: Citrus sinensis csi-miR169c-5p mature miRNA
• Sequence: 31 - UAGCCAAGGAUGACUUGCCU - 50
• Evidence: experimental ; Illumina [1]

Mature csi-miR169c-3p

• Accession: MIMAT0048890
• Description: Citrus sinensis csi-miR169c-3p mature miRNA
• Sequence: 105 - CAGGCAGUCUCCUUGGCUAAG - 125
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 28054378
   MicroRNA annotation of plant genomes - Do it right or not at all
   "Taylor RS, Tarver JE, Foroozani A, Donoghue PC"
   Bioessays (2017) 39:1600113