Stem-loop dre-mir-181a-5

Accession

MI0039513

Description

Danio rerio dre-mir-181a-5 precursor miRNA

Literature search

18 open access papers mention dre-mir-181a-5
(68 sentences)

Sequence

779366 reads, 50953 reads per million, 11 experiments

gcuggucucgcagAACAUUCAACGCUGUCGGUGAGUuuuagacauugaaaaACCAUCGACCGUUGACUGUGCCcugaggccacg
..((((((((....(((.((((((..(((((((.(((((.........)))))))))))))))))).)))....))))))))..

Structure

gc        cagA   U      CU       A     aga 
  uggucucg    ACA UCAACG  GUCGGUG GUuuu   c
  ||||||||    ||| ||||||  ||||||| |||||   a
  accggagu    UGU AGUUGC  CAGCUAC CAaaa   u
gc        cCCG   C      --       -     agu 

Annotation confidence High

Genome context

chr2: 45204633-45204716 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from dre-mir-181a-5

Mature dre-miR-181a-5p

• Accession: MIMAT0001623
• Description: Danio rerio dre-miR-181a-5p mature miRNA
• Sequence: 14 - AACAUUCAACGCUGUCGGUGAGU - 36
• Evidence: not_experimental

Mature dre-miR-181a-5-3p

• Accession: MIMAT0048655
• Description: Danio rerio dre-miR-181a-5-3p mature miRNA
• Sequence: 52 - ACCAUCGACCGUUGACUGUGCC - 73
• Evidence: not_experimental

References

1. PubMed ID: 26473382
   A Uniform System for the Annotation of Vertebrate microRNA Genes and the Evolution of the Human microRNAome
   "Fromm B, Billipp T, Peck LE, Johansen M, Tarver JE, King BL, Newcomb JM, Sempere LF, Flatmark K, Hovig E, Peterson KJ"
   "Annu Rev Genet (2015) 49:213-242