Stem-loop dre-mir-129-3

Accession

MI0039507

Description

Danio rerio dre-mir-129-3 precursor miRNA

Literature search

3 open access papers mention dre-mir-129-3
(12 sentences)

Sequence

387 reads, 23 reads per million, 8 experiments

guccuucacggcuCUUUUUGCGGUCUGGGCUUGCUguuccuuaaaucaccagucaggAAGCCCUUACCCCAAAAAGUAUcugugugggau
(((((.(((((..(((((((.(((..((((((.(((.................))).))))))..))).)))))))...))))).)))))

Structure

     u     -cu       C   CU      G   uuccuua 
guccu cacgg   CUUUUUG GGU  GGGCUU CUg       a
||||| |||||   ||||||| |||  |||||| |||       a
uaggg guguc   GAAAAAC CCA  CCCGAA gac       u
     u     UAU       C   UU      g   ugaccac 

Annotation confidence Medium

Genome context

chr18: 10670657-10670746 [+]

Mature dre-miR-129-5p

• Accession: MIMAT0001825
• Description: Danio rerio dre-miR-129-5p mature miRNA
• Sequence: 14 - CUUUUUGCGGUCUGGGCUUGCU - 35
• Evidence: experimental ; cloned [1]

Mature dre-miR-129-3-3p

• Accession: MIMAT0048649
• Description: Danio rerio dre-miR-129-3-3p mature miRNA
• Sequence: 58 - AAGCCCUUACCCCAAAAAGUAU - 79
• Evidence: not_experimental

References

1. PubMed ID: 26473382
   A Uniform System for the Annotation of Vertebrate microRNA Genes and the Evolution of the Human microRNAome
   "Fromm B, Billipp T, Peck LE, Johansen M, Tarver JE, King BL, Newcomb JM, Sempere LF, Flatmark K, Hovig E, Peterson KJ"
   "Annu Rev Genet (2015) 49:213-242