miRBase entry: ocu-mir-12093

Stem-loop ocu-mir-12093

Accession

MI0039495

Description

Oryctolagus cuniculus ocu-mir-12093 precursor miRNA

Sequence

AGAGCUACCUCUGGGACUGGUUucaaacucuucuagUCAGCCCCUGGGGUAGUUCUGA
(((((((((((.(((.((((((............)))))).))).)))))))))))..

Structure

--           U   A      ucaaa 
  AGAGCUACCUC GGG CUGGUU     c
  ||||||||||| ||| ||||||      
  UCUUGAUGGGG CCC GACUga     u
AG           U   C      ucuuc

Annotation confidence Not enough data

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Genome context

GL018731.1: 727960-728017 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from ocu-mir-12093

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ocu-miR-12093-5p

Accession	MIMAT0048625
Description	Oryctolagus cuniculus ocu-miR-12093-5p mature miRNA
Sequence	1 - AGAGCUACCUCUGGGACUGGUU - 22
Evidence	experimental Illumina [1]

Mature ocu-miR-12093-3p

Accession	MIMAT0048626
Description	Oryctolagus cuniculus ocu-miR-12093-3p mature miRNA
Sequence	37 - UCAGCCCCUGGGGUAGUUCUGA - 58
Evidence	experimental Illumina [1]

References

PubMed ID: 26733575
The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
"Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
"Genome Biol Evol (2016) 8:330-344