Stem-loop ocu-mir-654

Accession

MI0039455

Description

Oryctolagus cuniculus ocu-mir-654 precursor miRNA

Sequence

UGGCGGCCGGGGACAUGUGCucacuuggcgccaUAUGUCUGCCGACCGUCACC
((((((.((((((((((((((.....)))))...)))))).))).))))))..

Structure

--      C   -      ---     c 
  UGGCGG CGG GGACAU   GUGCu a
  |||||| ||| ||||||   ||||| c
  ACUGCC GCC UCUGUA   cgcgg u
CC      A   G      Uac     u 

Annotation confidence Not enough data

Genome context

GL019048.1: 133369-133421 [+]

Clustered miRNAs

17 other miRNAs are < 10 kb from ocu-mir-654

Mature ocu-miR-654-5p

• Accession: MIMAT0048545
• Description: Oryctolagus cuniculus ocu-miR-654-5p mature miRNA
• Sequence: 1 - UGGCGGCCGGGGACAUGUGC - 20
• Evidence: experimental ; Illumina [1]

Mature ocu-miR-654-3p

• Accession: MIMAT0048546
• Description: Oryctolagus cuniculus ocu-miR-654-3p mature miRNA
• Sequence: 34 - UAUGUCUGCCGACCGUCACC - 53
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26733575
   The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
   "Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
   "Genome Biol Evol (2016) 8:330-344