miRBase entry: ocu-mir-545

Stem-loop ocu-mir-545


Accession
MI0039446
Description
Oryctolagus cuniculus ocu-mir-545 precursor miRNA


Sequence

CCUCAGUAAAUGUUUAUUGGAUGaauaaaugagugacucaUCAACAAACAUUUAUUGCGUGCC
.(.((((((((((((....(((((.............)))))...)))))))))))).)....

Structure
---C U            AUUG     auaaa 
    C CAGUAAAUGUUU    GAUGa     u
    | ||||||||||||    |||||     g
    G GUUAUUUACAAA    CUacu     a
CCGU C            -CAA     cagug 


Annotation confidence Not enough data
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Genome context
GL018757.1: 1527803-1527865 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from ocu-mir-545
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ocu-miR-545-5p

Accession MIMAT0048527
Description Oryctolagus cuniculus ocu-miR-545-5p mature miRNA
Sequence 1 - CCUCAGUAAAUGUUUAUUGGAUG - 23
Evidence experimental
Illumina [1]

Mature ocu-miR-545-3p

Accession MIMAT0048528
Description Oryctolagus cuniculus ocu-miR-545-3p mature miRNA
Sequence 41 - UCAACAAACAUUUAUUGCGUGCC - 63
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26733575
    The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
    "Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
    "Genome Biol Evol (2016) 8:330-344